Strain Fitness in Escherichia coli BL21 around ECD_02026

Experiment: EV152

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_02025 and ECD_02026 are separated by 256 nucleotidesECD_02026 and ECD_02027 overlap by 4 nucleotidesECD_02027 and ECD_02028 overlap by 4 nucleotides ECD_02025: ECD_02025 - fructose-bisphosphate aldolase class I, at 2,075,307 to 2,076,359 _02025 ECD_02026: ECD_02026 - nucleoside transporter, low affinity, at 2,076,616 to 2,077,893 _02026 ECD_02027: ECD_02027 - ADP-ribosylglycohydrolase family protein, at 2,077,890 to 2,078,894 _02027 ECD_02028: ECD_02028 - putative kinase, at 2,078,891 to 2,079,856 _02028 Position (kb) 2076 2077 2078Strain fitness (log2 ratio) -1 0 1 2at 2075.667 kb on + strand, within ECD_02025at 2075.668 kb on - strand, within ECD_02025at 2075.668 kb on - strand, within ECD_02025at 2075.668 kb on - strand, within ECD_02025at 2075.855 kb on - strand, within ECD_02025at 2075.855 kb on - strand, within ECD_02025at 2075.927 kb on - strand, within ECD_02025at 2075.961 kb on - strand, within ECD_02025at 2076.206 kb on + strand, within ECD_02025at 2076.206 kb on + strand, within ECD_02025at 2076.206 kb on + strand, within ECD_02025at 2076.207 kb on - strand, within ECD_02025at 2076.211 kb on - strand, within ECD_02025at 2076.253 kb on - strand, within ECD_02025at 2076.256 kb on + strandat 2076.299 kb on + strandat 2076.300 kb on - strandat 2076.928 kb on + strand, within ECD_02026at 2076.928 kb on + strand, within ECD_02026at 2076.931 kb on - strand, within ECD_02026at 2077.297 kb on + strand, within ECD_02026at 2077.301 kb on - strand, within ECD_02026at 2077.504 kb on + strand, within ECD_02026at 2077.514 kb on - strand, within ECD_02026at 2077.550 kb on + strand, within ECD_02026at 2077.579 kb on + strand, within ECD_02026at 2077.579 kb on + strand, within ECD_02026at 2077.585 kb on + strand, within ECD_02026at 2077.617 kb on + strand, within ECD_02026at 2077.887 kb on + strandat 2077.887 kb on + strandat 2078.052 kb on - strand, within ECD_02027at 2078.410 kb on + strand, within ECD_02027at 2078.637 kb on - strand, within ECD_02027at 2078.847 kb on + strandat 2078.869 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction EV152
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2,075,667 + ECD_02025 0.34 -0.6
2,075,668 - ECD_02025 0.34 +0.1
2,075,668 - ECD_02025 0.34 +0.2
2,075,668 - ECD_02025 0.34 +0.3
2,075,855 - ECD_02025 0.52 -0.6
2,075,855 - ECD_02025 0.52 -0.5
2,075,927 - ECD_02025 0.59 -0.6
2,075,961 - ECD_02025 0.62 -1.4
2,076,206 + ECD_02025 0.85 -0.1
2,076,206 + ECD_02025 0.85 +0.2
2,076,206 + ECD_02025 0.85 -0.2
2,076,207 - ECD_02025 0.85 +0.5
2,076,211 - ECD_02025 0.86 -1.3
2,076,253 - ECD_02025 0.90 -0.4
2,076,256 + -0.5
2,076,299 + -1.0
2,076,300 - +0.4
2,076,928 + ECD_02026 0.24 -0.1
2,076,928 + ECD_02026 0.24 -1.2
2,076,931 - ECD_02026 0.25 +0.6
2,077,297 + ECD_02026 0.53 +1.1
2,077,301 - ECD_02026 0.54 +0.1
2,077,504 + ECD_02026 0.69 -0.4
2,077,514 - ECD_02026 0.70 +1.2
2,077,550 + ECD_02026 0.73 -1.4
2,077,579 + ECD_02026 0.75 +0.3
2,077,579 + ECD_02026 0.75 +2.2
2,077,585 + ECD_02026 0.76 +0.0
2,077,617 + ECD_02026 0.78 +0.1
2,077,887 + -1.2
2,077,887 + +0.6
2,078,052 - ECD_02027 0.16 -0.7
2,078,410 + ECD_02027 0.52 +1.6
2,078,637 - ECD_02027 0.74 +0.4
2,078,847 + +0.2
2,078,869 - +1.4

Or see this region's nucleotide sequence