Experiment: EV152
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_01581 and ECD_01582 are separated by 198 nucleotides ECD_01582 and ECD_01583 are separated by 100 nucleotides
ECD_01581: ECD_01581 - fumarate hydratase (fumarase A), aerobic Class I, at 1,631,928 to 1,633,574
_01581
ECD_01582: ECD_01582 - mannose-6-phosphate isomerase, at 1,633,773 to 1,634,948
_01582
ECD_01583: ECD_01583 - DUF945 family protein, at 1,635,049 to 1,636,557
_01583
Position (kb)
1633
1634
1635 Strain fitness (log2 ratio)
-1
0
1 at 1632.818 kb on - strand, within ECD_01581 at 1632.818 kb on - strand, within ECD_01581 at 1632.891 kb on - strand, within ECD_01581 at 1632.995 kb on - strand, within ECD_01581 at 1632.995 kb on - strand, within ECD_01581 at 1633.064 kb on - strand, within ECD_01581 at 1633.111 kb on + strand, within ECD_01581 at 1633.112 kb on - strand, within ECD_01581 at 1633.116 kb on - strand, within ECD_01581 at 1633.116 kb on - strand, within ECD_01581 at 1633.160 kb on - strand, within ECD_01581 at 1633.169 kb on - strand, within ECD_01581 at 1633.322 kb on - strand, within ECD_01581 at 1633.325 kb on + strand, within ECD_01581 at 1633.511 kb on - strand at 1633.514 kb on - strand at 1633.967 kb on + strand, within ECD_01582 at 1634.541 kb on + strand, within ECD_01582 at 1634.762 kb on + strand, within ECD_01582 at 1635.048 kb on + strand at 1635.054 kb on + strand at 1635.054 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction EV152 remove 1,632,818 - ECD_01581 0.54 +0.2 1,632,818 - ECD_01581 0.54 +0.4 1,632,891 - ECD_01581 0.58 +1.3 1,632,995 - ECD_01581 0.65 -0.1 1,632,995 - ECD_01581 0.65 +0.1 1,633,064 - ECD_01581 0.69 +1.4 1,633,111 + ECD_01581 0.72 -1.0 1,633,112 - ECD_01581 0.72 -0.7 1,633,116 - ECD_01581 0.72 -1.4 1,633,116 - ECD_01581 0.72 +0.4 1,633,160 - ECD_01581 0.75 +0.4 1,633,169 - ECD_01581 0.75 +0.5 1,633,322 - ECD_01581 0.85 +0.4 1,633,325 + ECD_01581 0.85 -1.3 1,633,511 - -0.0 1,633,514 - -0.8 1,633,967 + ECD_01582 0.16 -1.2 1,634,541 + ECD_01582 0.65 -1.4 1,634,762 + ECD_01582 0.84 +1.1 1,635,048 + -0.1 1,635,054 + -0.4 1,635,054 + +0.7
Or see this region's nucleotide sequence