Experiment: EV152
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_01495 and ECD_01496 are separated by 275 nucleotides ECD_01496 and ECD_01497 are separated by 43 nucleotides ECD_01497 and ECD_01498 are separated by 136 nucleotides ECD_01498 and ECD_01499 are separated by 88 nucleotides
ECD_01495: ECD_01495 - hydrogen peroxide resistance OB fold protein; putative periplasmic protein, at 1,573,401 to 1,573,793
_01495
ECD_01496: ECD_01496 - inactive PncC family protein, at 1,574,069 to 1,574,587
_01496
ECD_01497: ECD_01497 - dipeptidyl carboxypeptidase II, at 1,574,631 to 1,576,676
_01497
ECD_01498: ECD_01498 - NADP-dependent 3-hydroxy acid dehydrogenase; malonic semialdehyde reductase, at 1,576,813 to 1,577,559
_01498
ECD_01499: ECD_01499 - transcriptional repressor for rspAB, at 1,577,648 to 1,578,334
_01499
Position (kb) 1574
1575
1576
1577 Strain fitness (log2 ratio) -1
0
1 at 1574.172 kb on + strand, within ECD_01496 at 1574.584 kb on - strand at 1574.633 kb on - strand at 1574.667 kb on - strand at 1574.724 kb on - strand at 1577.146 kb on + strand, within ECD_01498 at 1577.148 kb on + strand, within ECD_01498 at 1577.624 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction EV152 remove 1,574,172 + ECD_01496 0.20 +1.0 1,574,584 - +0.9 1,574,633 - +0.8 1,574,667 - +0.2 1,574,724 - +1.5 1,577,146 + ECD_01498 0.45 +1.2 1,577,148 + ECD_01498 0.45 +0.6 1,577,624 + +0.6
Or see this region's nucleotide sequence