Experiment: EV152
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_01007 and ECD_04303 are separated by 203 nucleotides ECD_04303 and ECD_01008 overlap by 68 nucleotides ECD_01008 and ECD_01009 are separated by 257 nucleotides ECD_01009 and ECD_01010 are separated by 20 nucleotides ECD_01010 and ECD_01011 are separated by 10 nucleotides
ECD_01007: ECD_01007 - NAD(P)H:quinone oxidoreductase, at 1,071,393 to 1,071,989
_01007
ECD_04303: ECD_04303 - KGG family protein, at 1,072,193 to 1,072,429
_04303
ECD_01008: ECD_01008 - KGG family protein, at 1,072,362 to 1,072,535
_01008
ECD_01009: ECD_01009 - pyrimidine permease, at 1,072,793 to 1,074,121
_01009
ECD_01010: ECD_01010 - flavin:NADH reductase, at 1,074,142 to 1,074,636
_01010
ECD_01011: ECD_01011 - putative malonic semialdehyde reductase, at 1,074,647 to 1,075,237
_01011
Position (kb)
1072
1073
1074
1075 Strain fitness (log2 ratio)
-1
0
1
2 at 1072.010 kb on - strand at 1072.170 kb on + strand at 1072.324 kb on + strand, within ECD_04303 at 1072.340 kb on + strand, within ECD_04303 at 1072.341 kb on - strand, within ECD_04303 at 1072.628 kb on + strand at 1072.745 kb on + strand at 1072.745 kb on + strand at 1072.964 kb on - strand, within ECD_01009 at 1073.164 kb on - strand, within ECD_01009 at 1073.202 kb on + strand, within ECD_01009 at 1073.202 kb on + strand, within ECD_01009 at 1073.203 kb on - strand, within ECD_01009 at 1073.203 kb on - strand, within ECD_01009 at 1073.203 kb on - strand, within ECD_01009 at 1073.280 kb on + strand, within ECD_01009 at 1073.280 kb on + strand, within ECD_01009 at 1073.281 kb on - strand, within ECD_01009 at 1073.281 kb on - strand, within ECD_01009 at 1073.331 kb on - strand, within ECD_01009 at 1073.472 kb on - strand, within ECD_01009 at 1073.575 kb on + strand, within ECD_01009 at 1073.605 kb on + strand, within ECD_01009 at 1073.755 kb on - strand, within ECD_01009 at 1073.933 kb on + strand, within ECD_01009 at 1073.975 kb on + strand, within ECD_01009 at 1074.143 kb on + strand at 1074.649 kb on - strand at 1074.727 kb on + strand, within ECD_01011
Per-strain Table
Position Strand Gene LocusTag Fraction EV152 remove 1,072,010 - -0.1 1,072,170 + -0.4 1,072,324 + ECD_04303 0.55 +0.2 1,072,340 + ECD_04303 0.62 +0.6 1,072,341 - ECD_04303 0.62 +1.0 1,072,628 + +0.4 1,072,745 + -0.2 1,072,745 + +0.2 1,072,964 - ECD_01009 0.13 +0.2 1,073,164 - ECD_01009 0.28 +1.3 1,073,202 + ECD_01009 0.31 -0.0 1,073,202 + ECD_01009 0.31 +0.4 1,073,203 - ECD_01009 0.31 +0.0 1,073,203 - ECD_01009 0.31 -0.5 1,073,203 - ECD_01009 0.31 -0.0 1,073,280 + ECD_01009 0.37 +1.2 1,073,280 + ECD_01009 0.37 -0.6 1,073,281 - ECD_01009 0.37 -0.7 1,073,281 - ECD_01009 0.37 -0.0 1,073,331 - ECD_01009 0.40 +1.9 1,073,472 - ECD_01009 0.51 +1.9 1,073,575 + ECD_01009 0.59 +1.1 1,073,605 + ECD_01009 0.61 +1.8 1,073,755 - ECD_01009 0.72 +0.8 1,073,933 + ECD_01009 0.86 -0.9 1,073,975 + ECD_01009 0.89 -0.0 1,074,143 + -0.7 1,074,649 - -0.5 1,074,727 + ECD_01011 0.14 -0.3
Or see this region's nucleotide sequence