Experiment: EV152
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00828 and ECD_00829 are separated by 271 nucleotides ECD_00829 and ECD_00830 are separated by 36 nucleotides ECD_00830 and ECD_00831 are separated by 162 nucleotides
ECD_00828: ECD_00828 - hypothetical protein, at 877,081 to 877,416
_00828
ECD_00829: ECD_00829 - hypothetical protein, at 877,688 to 877,852
_00829
ECD_00830: ECD_00830 - hypothetical protein, at 877,889 to 878,812
_00830
ECD_00831: ECD_00831 - retron EC86 RNA-directed DNA polymerase-like protein, at 878,975 to 879,937
_00831
Position (kb) 877
878
879 Strain fitness (log2 ratio) -2
-1
0
1 at 876.948 kb on + strand at 877.077 kb on - strand at 877.083 kb on - strand at 877.184 kb on - strand, within ECD_00828 at 877.351 kb on - strand, within ECD_00828 at 877.501 kb on - strand at 877.555 kb on + strand at 877.760 kb on - strand, within ECD_00829 at 878.693 kb on + strand, within ECD_00830 at 878.698 kb on + strand, within ECD_00830 at 878.779 kb on + strand at 878.779 kb on + strand at 878.828 kb on + strand at 878.877 kb on + strand at 878.877 kb on + strand at 878.957 kb on + strand at 879.125 kb on + strand, within ECD_00831 at 879.198 kb on + strand, within ECD_00831 at 879.655 kb on + strand, within ECD_00831
Per-strain Table
Position Strand Gene LocusTag Fraction EV152 remove 876,948 + +1.3 877,077 - +0.6 877,083 - -0.0 877,184 - ECD_00828 0.31 -0.8 877,351 - ECD_00828 0.80 +0.5 877,501 - +1.1 877,555 + +0.3 877,760 - ECD_00829 0.44 +0.8 878,693 + ECD_00830 0.87 -0.6 878,698 + ECD_00830 0.88 -0.9 878,779 + -1.6 878,779 + -0.3 878,828 + -0.8 878,877 + -1.8 878,877 + -0.8 878,957 + +0.2 879,125 + ECD_00831 0.16 -1.2 879,198 + ECD_00831 0.23 -0.7 879,655 + ECD_00831 0.71 -1.2
Or see this region's nucleotide sequence