Strain Fitness in Escherichia coli BL21 around ECD_00574

Experiment: EV152

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_00573 and ECD_00574 are separated by 371 nucleotidesECD_00574 and ECD_00575 are separated by 244 nucleotides ECD_00573: ECD_00573 - thiol:disulfide interchange protein, periplasmic, at 597,642 to 598,403 _00573 ECD_00574: ECD_00574 - alkyl hydroperoxide reductase, C22 subunit, at 598,775 to 599,338 _00574 ECD_00575: ECD_00575 - alkyl hydroperoxide reductase, F52a subunit, FAD/NAD(P)-binding, at 599,583 to 601,148 _00575 Position (kb) 598 599 600Strain fitness (log2 ratio) -3 -2 -1 0 1at 597.819 kb on - strand, within ECD_00573at 597.822 kb on + strand, within ECD_00573at 597.823 kb on - strand, within ECD_00573at 597.840 kb on + strand, within ECD_00573at 597.963 kb on + strand, within ECD_00573at 597.964 kb on - strand, within ECD_00573at 597.964 kb on - strand, within ECD_00573at 598.049 kb on - strand, within ECD_00573at 598.186 kb on + strand, within ECD_00573at 598.193 kb on - strand, within ECD_00573at 598.193 kb on - strand, within ECD_00573at 598.211 kb on + strand, within ECD_00573at 598.229 kb on - strand, within ECD_00573at 598.252 kb on + strand, within ECD_00573at 598.265 kb on - strand, within ECD_00573at 598.405 kb on - strandat 598.452 kb on + strandat 598.452 kb on + strandat 598.464 kb on - strandat 598.475 kb on + strandat 598.475 kb on + strandat 598.475 kb on + strandat 598.500 kb on - strandat 598.512 kb on + strandat 598.512 kb on + strandat 598.536 kb on + strandat 598.585 kb on - strandat 598.623 kb on + strandat 598.678 kb on + strandat 598.683 kb on + strandat 598.743 kb on + strandat 598.743 kb on + strandat 598.744 kb on - strandat 598.772 kb on + strandat 598.977 kb on + strand, within ECD_00574at 598.977 kb on + strand, within ECD_00574at 598.977 kb on + strand, within ECD_00574at 598.977 kb on + strand, within ECD_00574at 598.986 kb on + strand, within ECD_00574at 598.990 kb on + strand, within ECD_00574at 599.092 kb on + strand, within ECD_00574at 599.243 kb on + strand, within ECD_00574at 599.247 kb on + strand, within ECD_00574at 599.247 kb on + strand, within ECD_00574at 599.329 kb on + strandat 599.397 kb on + strandat 599.397 kb on + strandat 599.397 kb on + strandat 599.405 kb on + strandat 599.405 kb on + strandat 599.676 kb on - strandat 599.747 kb on + strand, within ECD_00575at 599.748 kb on - strand, within ECD_00575at 599.766 kb on - strand, within ECD_00575at 599.972 kb on + strand, within ECD_00575at 599.973 kb on - strand, within ECD_00575at 600.013 kb on + strand, within ECD_00575at 600.219 kb on + strand, within ECD_00575at 600.220 kb on - strand, within ECD_00575at 600.282 kb on - strand, within ECD_00575

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Per-strain Table

Position Strand Gene LocusTag Fraction EV152
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597,819 - ECD_00573 0.23 +1.2
597,822 + ECD_00573 0.24 -1.7
597,823 - ECD_00573 0.24 +0.4
597,840 + ECD_00573 0.26 -0.5
597,963 + ECD_00573 0.42 -0.6
597,964 - ECD_00573 0.42 -0.8
597,964 - ECD_00573 0.42 +0.3
598,049 - ECD_00573 0.53 +0.1
598,186 + ECD_00573 0.71 -1.3
598,193 - ECD_00573 0.72 +0.7
598,193 - ECD_00573 0.72 -0.0
598,211 + ECD_00573 0.75 -0.1
598,229 - ECD_00573 0.77 -0.5
598,252 + ECD_00573 0.80 +0.1
598,265 - ECD_00573 0.82 +1.2
598,405 - +0.4
598,452 + +0.6
598,452 + -0.5
598,464 - +0.3
598,475 + -0.0
598,475 + -0.1
598,475 + +0.4
598,500 - +1.2
598,512 + +1.4
598,512 + -0.0
598,536 + +0.7
598,585 - +0.8
598,623 + +0.5
598,678 + +1.0
598,683 + +0.4
598,743 + -1.1
598,743 + -0.1
598,744 - -3.2
598,772 + -1.0
598,977 + ECD_00574 0.36 -0.5
598,977 + ECD_00574 0.36 +1.2
598,977 + ECD_00574 0.36 -0.8
598,977 + ECD_00574 0.36 -1.0
598,986 + ECD_00574 0.37 -1.7
598,990 + ECD_00574 0.38 -2.2
599,092 + ECD_00574 0.56 -1.3
599,243 + ECD_00574 0.83 -1.0
599,247 + ECD_00574 0.84 -0.4
599,247 + ECD_00574 0.84 -1.0
599,329 + +1.2
599,397 + +0.3
599,397 + +0.3
599,397 + -1.1
599,405 + -0.0
599,405 + -0.1
599,676 - +0.5
599,747 + ECD_00575 0.10 +0.2
599,748 - ECD_00575 0.11 -0.1
599,766 - ECD_00575 0.12 +0.5
599,972 + ECD_00575 0.25 +0.5
599,973 - ECD_00575 0.25 -2.1
600,013 + ECD_00575 0.27 -1.1
600,219 + ECD_00575 0.41 -0.7
600,220 - ECD_00575 0.41 -0.5
600,282 - ECD_00575 0.45 -1.5

Or see this region's nucleotide sequence