Experiment: EV152
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00538 and ECD_00539 are separated by 107 nucleotides ECD_00539 and ECD_00540 are separated by 93 nucleotides ECD_00540 and ECD_00541 are separated by 64 nucleotides ECD_00541 and ECD_00542 are separated by 65 nucleotides
ECD_00538: ECD_00538 - mechanosensitive channel protein, miniconductance, at 562,085 to 563,332
_00538
ECD_00539: ECD_00539 - dihydropteridine reductase, NAD(P)H-dependent, oxygen-insensitive, at 563,440 to 564,093
_00539
ECD_00540: ECD_00540 - DUF419 family protein, at 564,187 to 564,555
_00540
ECD_00541: ECD_00541 - DUF1158 family putative inner membrane protein, at 564,620 to 564,868
_00541
ECD_00542: ECD_00542 - weak gamma-glutamyl:cysteine ligase, at 564,934 to 566,052
_00542
Position (kb) 563
564
565 Strain fitness (log2 ratio) -1
0
1 at 562.449 kb on - strand, within ECD_00538 at 562.733 kb on - strand, within ECD_00538 at 562.754 kb on - strand, within ECD_00538 at 562.754 kb on - strand, within ECD_00538 at 562.783 kb on + strand, within ECD_00538 at 562.784 kb on - strand, within ECD_00538 at 562.914 kb on - strand, within ECD_00538 at 562.970 kb on - strand, within ECD_00538 at 563.322 kb on - strand at 563.322 kb on - strand at 563.332 kb on + strand at 563.346 kb on + strand at 563.347 kb on - strand at 563.547 kb on - strand, within ECD_00539 at 563.716 kb on - strand, within ECD_00539 at 563.874 kb on + strand, within ECD_00539 at 563.874 kb on + strand, within ECD_00539 at 563.891 kb on + strand, within ECD_00539 at 563.892 kb on - strand, within ECD_00539 at 563.949 kb on + strand, within ECD_00539 at 563.988 kb on - strand, within ECD_00539 at 564.156 kb on - strand at 564.176 kb on - strand at 564.176 kb on - strand at 564.356 kb on - strand, within ECD_00540 at 564.436 kb on - strand, within ECD_00540 at 564.590 kb on + strand at 564.590 kb on + strand at 564.591 kb on - strand at 564.670 kb on - strand, within ECD_00541 at 564.868 kb on + strand at 564.884 kb on - strand at 564.935 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction EV152 remove 562,449 - ECD_00538 0.29 -0.4 562,733 - ECD_00538 0.52 -0.5 562,754 - ECD_00538 0.54 +0.5 562,754 - ECD_00538 0.54 +1.3 562,783 + ECD_00538 0.56 -1.5 562,784 - ECD_00538 0.56 +0.3 562,914 - ECD_00538 0.66 -0.3 562,970 - ECD_00538 0.71 -0.2 563,322 - +1.1 563,322 - -0.2 563,332 + -1.1 563,346 + +0.3 563,347 - +0.1 563,547 - ECD_00539 0.16 +0.2 563,716 - ECD_00539 0.42 +1.0 563,874 + ECD_00539 0.66 +1.6 563,874 + ECD_00539 0.66 +0.6 563,891 + ECD_00539 0.69 +0.3 563,892 - ECD_00539 0.69 +1.0 563,949 + ECD_00539 0.78 +1.1 563,988 - ECD_00539 0.84 -1.7 564,156 - -0.3 564,176 - +0.1 564,176 - -0.4 564,356 - ECD_00540 0.46 +0.8 564,436 - ECD_00540 0.67 +0.2 564,590 + -0.3 564,590 + +0.5 564,591 - +0.4 564,670 - ECD_00541 0.20 -0.5 564,868 + -0.4 564,884 - +0.2 564,935 + -0.8
Or see this region's nucleotide sequence