Strain Fitness in Escherichia coli BL21 around ECD_00374

Experiment: EV152

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_00373 and ECD_00374 are separated by 167 nucleotidesECD_00374 and ECD_00375 are separated by 127 nucleotides ECD_00373: ECD_00373 - 2-dehydropantoate reductase, NADPH-specific, at 409,005 to 409,916 _00373 ECD_00374: ECD_00374 - phage Phi6 host factor, ATP/GTP binding protein, at 410,084 to 410,575 _00374 ECD_00375: ECD_00375 - putative transporter, at 410,703 to 412,067 _00375 Position (kb) 410 411Strain fitness (log2 ratio) -1 0 1at 409.141 kb on + strand, within ECD_00373at 409.297 kb on - strand, within ECD_00373at 409.297 kb on - strand, within ECD_00373at 409.326 kb on + strand, within ECD_00373at 409.472 kb on - strand, within ECD_00373at 409.529 kb on + strand, within ECD_00373at 409.530 kb on - strand, within ECD_00373at 409.632 kb on + strand, within ECD_00373at 409.639 kb on - strand, within ECD_00373at 409.647 kb on - strand, within ECD_00373at 409.651 kb on - strand, within ECD_00373at 409.806 kb on - strand, within ECD_00373at 409.875 kb on + strandat 409.876 kb on - strandat 409.876 kb on - strandat 409.954 kb on - strandat 409.966 kb on + strandat 409.998 kb on + strandat 410.523 kb on + strand, within ECD_00374at 410.660 kb on + strandat 410.768 kb on - strandat 410.836 kb on - strandat 410.891 kb on - strand, within ECD_00375at 411.041 kb on - strand, within ECD_00375at 411.041 kb on - strand, within ECD_00375at 411.041 kb on - strand, within ECD_00375at 411.065 kb on - strand, within ECD_00375at 411.089 kb on + strand, within ECD_00375at 411.089 kb on + strand, within ECD_00375at 411.259 kb on + strand, within ECD_00375at 411.260 kb on - strand, within ECD_00375at 411.260 kb on - strand, within ECD_00375at 411.352 kb on - strand, within ECD_00375at 411.378 kb on - strand, within ECD_00375at 411.404 kb on + strand, within ECD_00375at 411.404 kb on + strand, within ECD_00375at 411.404 kb on + strand, within ECD_00375at 411.405 kb on - strand, within ECD_00375at 411.405 kb on - strand, within ECD_00375at 411.485 kb on + strand, within ECD_00375at 411.485 kb on + strand, within ECD_00375at 411.485 kb on + strand, within ECD_00375at 411.489 kb on + strand, within ECD_00375at 411.490 kb on - strand, within ECD_00375at 411.490 kb on - strand, within ECD_00375at 411.490 kb on - strand, within ECD_00375at 411.500 kb on + strand, within ECD_00375at 411.501 kb on - strand, within ECD_00375at 411.501 kb on - strand, within ECD_00375at 411.552 kb on - strand, within ECD_00375

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Per-strain Table

Position Strand Gene LocusTag Fraction EV152
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409,141 + ECD_00373 0.15 -0.1
409,297 - ECD_00373 0.32 +0.4
409,297 - ECD_00373 0.32 +0.4
409,326 + ECD_00373 0.35 +0.1
409,472 - ECD_00373 0.51 +0.6
409,529 + ECD_00373 0.57 -0.5
409,530 - ECD_00373 0.58 +0.1
409,632 + ECD_00373 0.69 +0.6
409,639 - ECD_00373 0.70 -0.8
409,647 - ECD_00373 0.70 +0.1
409,651 - ECD_00373 0.71 +0.5
409,806 - ECD_00373 0.88 -0.1
409,875 + +0.4
409,876 - -0.3
409,876 - -0.4
409,954 - -0.2
409,966 + -0.1
409,998 + -0.2
410,523 + ECD_00374 0.89 -1.0
410,660 + +0.5
410,768 - -0.2
410,836 - +0.7
410,891 - ECD_00375 0.14 -0.5
411,041 - ECD_00375 0.25 +0.8
411,041 - ECD_00375 0.25 +0.7
411,041 - ECD_00375 0.25 -1.1
411,065 - ECD_00375 0.27 +0.2
411,089 + ECD_00375 0.28 +0.7
411,089 + ECD_00375 0.28 +0.5
411,259 + ECD_00375 0.41 +0.6
411,260 - ECD_00375 0.41 +0.4
411,260 - ECD_00375 0.41 +0.0
411,352 - ECD_00375 0.48 +1.0
411,378 - ECD_00375 0.49 +0.2
411,404 + ECD_00375 0.51 +0.2
411,404 + ECD_00375 0.51 -1.1
411,404 + ECD_00375 0.51 -0.5
411,405 - ECD_00375 0.51 -0.4
411,405 - ECD_00375 0.51 +0.1
411,485 + ECD_00375 0.57 -0.7
411,485 + ECD_00375 0.57 +0.7
411,485 + ECD_00375 0.57 -0.1
411,489 + ECD_00375 0.58 -0.5
411,490 - ECD_00375 0.58 +0.6
411,490 - ECD_00375 0.58 -0.7
411,490 - ECD_00375 0.58 -0.2
411,500 + ECD_00375 0.58 +0.5
411,501 - ECD_00375 0.58 +0.1
411,501 - ECD_00375 0.58 -0.4
411,552 - ECD_00375 0.62 -0.3

Or see this region's nucleotide sequence