Strain Fitness in Escherichia coli BL21 around ECD_04170

Experiment: EV152

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_04169 and ECD_04170 are separated by 11 nucleotidesECD_04170 and ECD_04171 overlap by 4 nucleotides ECD_04169: ECD_04169 - putative PTS system EIIC permease component, at 4,437,433 to 4,438,746 _04169 ECD_04170: ECD_04170 - putative enzyme IIB component of PTS, at 4,438,758 to 4,439,036 _04170 ECD_04171: ECD_04171 - putative endoglucanase with Zn-dependent exopeptidase domain, at 4,439,033 to 4,440,154 _04171 Position (kb) 4438 4439 4440Strain fitness (log2 ratio) -2 -1 0 1at 4437.806 kb on - strand, within ECD_04169at 4437.810 kb on + strand, within ECD_04169at 4437.811 kb on - strand, within ECD_04169at 4437.811 kb on - strand, within ECD_04169at 4437.811 kb on - strand, within ECD_04169at 4437.823 kb on + strand, within ECD_04169at 4437.824 kb on - strand, within ECD_04169at 4437.884 kb on + strand, within ECD_04169at 4438.005 kb on + strand, within ECD_04169at 4438.166 kb on + strand, within ECD_04169at 4438.170 kb on + strand, within ECD_04169at 4438.170 kb on + strand, within ECD_04169at 4438.171 kb on - strand, within ECD_04169at 4438.171 kb on - strand, within ECD_04169at 4438.181 kb on - strand, within ECD_04169at 4438.230 kb on + strand, within ECD_04169at 4438.231 kb on - strand, within ECD_04169at 4438.325 kb on + strand, within ECD_04169at 4438.344 kb on + strand, within ECD_04169at 4438.345 kb on - strand, within ECD_04169at 4438.373 kb on + strand, within ECD_04169at 4438.388 kb on + strand, within ECD_04169at 4438.389 kb on - strand, within ECD_04169at 4438.452 kb on + strand, within ECD_04169at 4438.678 kb on - strandat 4438.737 kb on - strandat 4438.746 kb on + strandat 4438.747 kb on - strandat 4438.747 kb on - strandat 4438.747 kb on - strandat 4438.875 kb on + strand, within ECD_04170at 4438.880 kb on + strand, within ECD_04170at 4438.880 kb on + strand, within ECD_04170at 4438.881 kb on - strand, within ECD_04170at 4438.895 kb on + strand, within ECD_04170at 4439.099 kb on - strandat 4439.099 kb on - strandat 4439.099 kb on - strandat 4439.099 kb on - strandat 4439.209 kb on + strand, within ECD_04171at 4439.210 kb on - strand, within ECD_04171at 4439.210 kb on - strand, within ECD_04171at 4439.364 kb on + strand, within ECD_04171at 4439.449 kb on + strand, within ECD_04171at 4439.455 kb on + strand, within ECD_04171at 4439.455 kb on + strand, within ECD_04171at 4439.455 kb on + strand, within ECD_04171at 4439.455 kb on + strand, within ECD_04171at 4439.456 kb on - strand, within ECD_04171at 4439.486 kb on + strand, within ECD_04171at 4439.487 kb on - strand, within ECD_04171at 4439.541 kb on + strand, within ECD_04171at 4439.563 kb on + strand, within ECD_04171at 4439.563 kb on + strand, within ECD_04171at 4439.564 kb on - strand, within ECD_04171at 4439.566 kb on + strand, within ECD_04171at 4439.573 kb on - strand, within ECD_04171at 4439.573 kb on - strand, within ECD_04171at 4439.573 kb on - strand, within ECD_04171at 4439.600 kb on - strand, within ECD_04171at 4439.600 kb on - strand, within ECD_04171at 4439.606 kb on + strand, within ECD_04171at 4439.607 kb on - strand, within ECD_04171at 4439.627 kb on - strand, within ECD_04171at 4439.668 kb on - strand, within ECD_04171at 4439.668 kb on - strand, within ECD_04171at 4439.668 kb on - strand, within ECD_04171at 4439.705 kb on + strand, within ECD_04171at 4439.706 kb on - strand, within ECD_04171at 4439.707 kb on + strand, within ECD_04171at 4439.803 kb on + strand, within ECD_04171at 4439.813 kb on - strand, within ECD_04171at 4439.866 kb on + strand, within ECD_04171at 4439.954 kb on - strand, within ECD_04171at 4440.000 kb on + strand, within ECD_04171

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Per-strain Table

Position Strand Gene LocusTag Fraction EV152
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4,437,806 - ECD_04169 0.28 +0.4
4,437,810 + ECD_04169 0.29 +0.2
4,437,811 - ECD_04169 0.29 +1.1
4,437,811 - ECD_04169 0.29 -0.5
4,437,811 - ECD_04169 0.29 +0.7
4,437,823 + ECD_04169 0.30 +1.1
4,437,824 - ECD_04169 0.30 +0.1
4,437,884 + ECD_04169 0.34 +0.6
4,438,005 + ECD_04169 0.44 -0.2
4,438,166 + ECD_04169 0.56 +1.4
4,438,170 + ECD_04169 0.56 -1.5
4,438,170 + ECD_04169 0.56 -1.0
4,438,171 - ECD_04169 0.56 -0.1
4,438,171 - ECD_04169 0.56 +1.1
4,438,181 - ECD_04169 0.57 +0.7
4,438,230 + ECD_04169 0.61 -0.9
4,438,231 - ECD_04169 0.61 -0.2
4,438,325 + ECD_04169 0.68 -0.3
4,438,344 + ECD_04169 0.69 -0.2
4,438,345 - ECD_04169 0.69 -0.5
4,438,373 + ECD_04169 0.72 -0.8
4,438,388 + ECD_04169 0.73 +0.0
4,438,389 - ECD_04169 0.73 -0.5
4,438,452 + ECD_04169 0.78 -0.3
4,438,678 - -0.9
4,438,737 - -0.4
4,438,746 + -0.5
4,438,747 - +0.7
4,438,747 - +0.2
4,438,747 - +1.4
4,438,875 + ECD_04170 0.42 +0.4
4,438,880 + ECD_04170 0.44 -1.0
4,438,880 + ECD_04170 0.44 +0.5
4,438,881 - ECD_04170 0.44 -1.1
4,438,895 + ECD_04170 0.49 -0.9
4,439,099 - +0.1
4,439,099 - -0.3
4,439,099 - -0.4
4,439,099 - -0.4
4,439,209 + ECD_04171 0.16 +0.3
4,439,210 - ECD_04171 0.16 -1.9
4,439,210 - ECD_04171 0.16 +0.3
4,439,364 + ECD_04171 0.30 -0.7
4,439,449 + ECD_04171 0.37 +0.5
4,439,455 + ECD_04171 0.38 -0.9
4,439,455 + ECD_04171 0.38 +0.5
4,439,455 + ECD_04171 0.38 -0.0
4,439,455 + ECD_04171 0.38 +1.4
4,439,456 - ECD_04171 0.38 -1.5
4,439,486 + ECD_04171 0.40 +0.4
4,439,487 - ECD_04171 0.40 -0.3
4,439,541 + ECD_04171 0.45 -1.3
4,439,563 + ECD_04171 0.47 +0.7
4,439,563 + ECD_04171 0.47 -1.2
4,439,564 - ECD_04171 0.47 -0.5
4,439,566 + ECD_04171 0.48 +0.0
4,439,573 - ECD_04171 0.48 +0.9
4,439,573 - ECD_04171 0.48 -0.8
4,439,573 - ECD_04171 0.48 +0.6
4,439,600 - ECD_04171 0.51 -0.6
4,439,600 - ECD_04171 0.51 +0.1
4,439,606 + ECD_04171 0.51 +0.8
4,439,607 - ECD_04171 0.51 +0.1
4,439,627 - ECD_04171 0.53 +0.0
4,439,668 - ECD_04171 0.57 -0.2
4,439,668 - ECD_04171 0.57 +0.1
4,439,668 - ECD_04171 0.57 -0.5
4,439,705 + ECD_04171 0.60 -0.1
4,439,706 - ECD_04171 0.60 -0.7
4,439,707 + ECD_04171 0.60 +0.8
4,439,803 + ECD_04171 0.69 +0.3
4,439,813 - ECD_04171 0.70 +0.4
4,439,866 + ECD_04171 0.74 +0.5
4,439,954 - ECD_04171 0.82 +0.4
4,440,000 + ECD_04171 0.86 -0.8

Or see this region's nucleotide sequence