Experiment: EV152
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_04169 and ECD_04170 are separated by 11 nucleotides ECD_04170 and ECD_04171 overlap by 4 nucleotides
ECD_04169: ECD_04169 - putative PTS system EIIC permease component, at 4,437,433 to 4,438,746
_04169
ECD_04170: ECD_04170 - putative enzyme IIB component of PTS, at 4,438,758 to 4,439,036
_04170
ECD_04171: ECD_04171 - putative endoglucanase with Zn-dependent exopeptidase domain, at 4,439,033 to 4,440,154
_04171
Position (kb)
4438
4439
4440 Strain fitness (log2 ratio)
-2
-1
0
1 at 4437.806 kb on - strand, within ECD_04169 at 4437.810 kb on + strand, within ECD_04169 at 4437.811 kb on - strand, within ECD_04169 at 4437.811 kb on - strand, within ECD_04169 at 4437.811 kb on - strand, within ECD_04169 at 4437.823 kb on + strand, within ECD_04169 at 4437.824 kb on - strand, within ECD_04169 at 4437.884 kb on + strand, within ECD_04169 at 4438.005 kb on + strand, within ECD_04169 at 4438.166 kb on + strand, within ECD_04169 at 4438.170 kb on + strand, within ECD_04169 at 4438.170 kb on + strand, within ECD_04169 at 4438.171 kb on - strand, within ECD_04169 at 4438.171 kb on - strand, within ECD_04169 at 4438.181 kb on - strand, within ECD_04169 at 4438.230 kb on + strand, within ECD_04169 at 4438.231 kb on - strand, within ECD_04169 at 4438.325 kb on + strand, within ECD_04169 at 4438.344 kb on + strand, within ECD_04169 at 4438.345 kb on - strand, within ECD_04169 at 4438.373 kb on + strand, within ECD_04169 at 4438.388 kb on + strand, within ECD_04169 at 4438.389 kb on - strand, within ECD_04169 at 4438.452 kb on + strand, within ECD_04169 at 4438.678 kb on - strand at 4438.737 kb on - strand at 4438.746 kb on + strand at 4438.747 kb on - strand at 4438.747 kb on - strand at 4438.747 kb on - strand at 4438.875 kb on + strand, within ECD_04170 at 4438.880 kb on + strand, within ECD_04170 at 4438.880 kb on + strand, within ECD_04170 at 4438.881 kb on - strand, within ECD_04170 at 4438.895 kb on + strand, within ECD_04170 at 4439.099 kb on - strand at 4439.099 kb on - strand at 4439.099 kb on - strand at 4439.099 kb on - strand at 4439.209 kb on + strand, within ECD_04171 at 4439.210 kb on - strand, within ECD_04171 at 4439.210 kb on - strand, within ECD_04171 at 4439.364 kb on + strand, within ECD_04171 at 4439.449 kb on + strand, within ECD_04171 at 4439.455 kb on + strand, within ECD_04171 at 4439.455 kb on + strand, within ECD_04171 at 4439.455 kb on + strand, within ECD_04171 at 4439.455 kb on + strand, within ECD_04171 at 4439.456 kb on - strand, within ECD_04171 at 4439.486 kb on + strand, within ECD_04171 at 4439.487 kb on - strand, within ECD_04171 at 4439.541 kb on + strand, within ECD_04171 at 4439.563 kb on + strand, within ECD_04171 at 4439.563 kb on + strand, within ECD_04171 at 4439.564 kb on - strand, within ECD_04171 at 4439.566 kb on + strand, within ECD_04171 at 4439.573 kb on - strand, within ECD_04171 at 4439.573 kb on - strand, within ECD_04171 at 4439.573 kb on - strand, within ECD_04171 at 4439.600 kb on - strand, within ECD_04171 at 4439.600 kb on - strand, within ECD_04171 at 4439.606 kb on + strand, within ECD_04171 at 4439.607 kb on - strand, within ECD_04171 at 4439.627 kb on - strand, within ECD_04171 at 4439.668 kb on - strand, within ECD_04171 at 4439.668 kb on - strand, within ECD_04171 at 4439.668 kb on - strand, within ECD_04171 at 4439.705 kb on + strand, within ECD_04171 at 4439.706 kb on - strand, within ECD_04171 at 4439.707 kb on + strand, within ECD_04171 at 4439.803 kb on + strand, within ECD_04171 at 4439.813 kb on - strand, within ECD_04171 at 4439.866 kb on + strand, within ECD_04171 at 4439.954 kb on - strand, within ECD_04171 at 4440.000 kb on + strand, within ECD_04171
Per-strain Table
Position Strand Gene LocusTag Fraction EV152 remove 4,437,806 - ECD_04169 0.28 +0.4 4,437,810 + ECD_04169 0.29 +0.2 4,437,811 - ECD_04169 0.29 +1.1 4,437,811 - ECD_04169 0.29 -0.5 4,437,811 - ECD_04169 0.29 +0.7 4,437,823 + ECD_04169 0.30 +1.1 4,437,824 - ECD_04169 0.30 +0.1 4,437,884 + ECD_04169 0.34 +0.6 4,438,005 + ECD_04169 0.44 -0.2 4,438,166 + ECD_04169 0.56 +1.4 4,438,170 + ECD_04169 0.56 -1.5 4,438,170 + ECD_04169 0.56 -1.0 4,438,171 - ECD_04169 0.56 -0.1 4,438,171 - ECD_04169 0.56 +1.1 4,438,181 - ECD_04169 0.57 +0.7 4,438,230 + ECD_04169 0.61 -0.9 4,438,231 - ECD_04169 0.61 -0.2 4,438,325 + ECD_04169 0.68 -0.3 4,438,344 + ECD_04169 0.69 -0.2 4,438,345 - ECD_04169 0.69 -0.5 4,438,373 + ECD_04169 0.72 -0.8 4,438,388 + ECD_04169 0.73 +0.0 4,438,389 - ECD_04169 0.73 -0.5 4,438,452 + ECD_04169 0.78 -0.3 4,438,678 - -0.9 4,438,737 - -0.4 4,438,746 + -0.5 4,438,747 - +0.7 4,438,747 - +0.2 4,438,747 - +1.4 4,438,875 + ECD_04170 0.42 +0.4 4,438,880 + ECD_04170 0.44 -1.0 4,438,880 + ECD_04170 0.44 +0.5 4,438,881 - ECD_04170 0.44 -1.1 4,438,895 + ECD_04170 0.49 -0.9 4,439,099 - +0.1 4,439,099 - -0.3 4,439,099 - -0.4 4,439,099 - -0.4 4,439,209 + ECD_04171 0.16 +0.3 4,439,210 - ECD_04171 0.16 -1.9 4,439,210 - ECD_04171 0.16 +0.3 4,439,364 + ECD_04171 0.30 -0.7 4,439,449 + ECD_04171 0.37 +0.5 4,439,455 + ECD_04171 0.38 -0.9 4,439,455 + ECD_04171 0.38 +0.5 4,439,455 + ECD_04171 0.38 -0.0 4,439,455 + ECD_04171 0.38 +1.4 4,439,456 - ECD_04171 0.38 -1.5 4,439,486 + ECD_04171 0.40 +0.4 4,439,487 - ECD_04171 0.40 -0.3 4,439,541 + ECD_04171 0.45 -1.3 4,439,563 + ECD_04171 0.47 +0.7 4,439,563 + ECD_04171 0.47 -1.2 4,439,564 - ECD_04171 0.47 -0.5 4,439,566 + ECD_04171 0.48 +0.0 4,439,573 - ECD_04171 0.48 +0.9 4,439,573 - ECD_04171 0.48 -0.8 4,439,573 - ECD_04171 0.48 +0.6 4,439,600 - ECD_04171 0.51 -0.6 4,439,600 - ECD_04171 0.51 +0.1 4,439,606 + ECD_04171 0.51 +0.8 4,439,607 - ECD_04171 0.51 +0.1 4,439,627 - ECD_04171 0.53 +0.0 4,439,668 - ECD_04171 0.57 -0.2 4,439,668 - ECD_04171 0.57 +0.1 4,439,668 - ECD_04171 0.57 -0.5 4,439,705 + ECD_04171 0.60 -0.1 4,439,706 - ECD_04171 0.60 -0.7 4,439,707 + ECD_04171 0.60 +0.8 4,439,803 + ECD_04171 0.69 +0.3 4,439,813 - ECD_04171 0.70 +0.4 4,439,866 + ECD_04171 0.74 +0.5 4,439,954 - ECD_04171 0.82 +0.4 4,440,000 + ECD_04171 0.86 -0.8
Or see this region's nucleotide sequence