Experiment: EV152
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_04097 and ECD_04098 are separated by 13 nucleotides ECD_04098 and ECD_04099 overlap by 14 nucleotides
ECD_04097: ECD_04097 - putative sugar ABC transporter ATPase, at 4,362,673 to 4,364,175
_04097
ECD_04098: ECD_04098 - putative sugar ABC transporter permease, at 4,364,189 to 4,365,211
_04098
ECD_04099: ECD_04099 - putative sugar ABC transporter permease, at 4,365,198 to 4,366,193
_04099
Position (kb)
4364
4365
4366 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 4363.221 kb on - strand, within ECD_04097 at 4363.221 kb on - strand, within ECD_04097 at 4363.221 kb on - strand, within ECD_04097 at 4363.221 kb on - strand, within ECD_04097 at 4363.297 kb on + strand, within ECD_04097 at 4363.520 kb on + strand, within ECD_04097 at 4363.569 kb on + strand, within ECD_04097 at 4363.746 kb on + strand, within ECD_04097 at 4363.781 kb on + strand, within ECD_04097 at 4363.782 kb on - strand, within ECD_04097 at 4364.212 kb on + strand at 4364.213 kb on - strand at 4364.355 kb on + strand, within ECD_04098 at 4364.356 kb on - strand, within ECD_04098 at 4364.356 kb on - strand, within ECD_04098 at 4364.565 kb on + strand, within ECD_04098 at 4364.671 kb on + strand, within ECD_04098 at 4364.873 kb on + strand, within ECD_04098 at 4364.912 kb on - strand, within ECD_04098 at 4365.025 kb on + strand, within ECD_04098 at 4365.026 kb on - strand, within ECD_04098 at 4365.058 kb on + strand, within ECD_04098 at 4365.120 kb on + strand at 4365.182 kb on - strand at 4365.193 kb on + strand at 4365.193 kb on + strand at 4365.209 kb on + strand at 4365.253 kb on - strand at 4365.510 kb on - strand, within ECD_04099 at 4365.548 kb on + strand, within ECD_04099 at 4365.591 kb on + strand, within ECD_04099 at 4365.592 kb on - strand, within ECD_04099 at 4365.633 kb on + strand, within ECD_04099 at 4365.682 kb on + strand, within ECD_04099 at 4365.683 kb on - strand, within ECD_04099 at 4365.725 kb on + strand, within ECD_04099 at 4365.726 kb on - strand, within ECD_04099 at 4365.763 kb on + strand, within ECD_04099 at 4365.764 kb on - strand, within ECD_04099 at 4365.764 kb on - strand, within ECD_04099 at 4365.764 kb on - strand, within ECD_04099 at 4365.765 kb on + strand, within ECD_04099 at 4365.765 kb on + strand, within ECD_04099 at 4365.766 kb on - strand, within ECD_04099 at 4365.766 kb on - strand, within ECD_04099 at 4365.828 kb on - strand, within ECD_04099 at 4365.837 kb on + strand, within ECD_04099 at 4365.838 kb on - strand, within ECD_04099 at 4365.838 kb on - strand, within ECD_04099 at 4365.838 kb on - strand, within ECD_04099 at 4365.838 kb on - strand, within ECD_04099 at 4365.839 kb on + strand, within ECD_04099 at 4365.839 kb on + strand, within ECD_04099 at 4365.839 kb on + strand, within ECD_04099 at 4365.839 kb on + strand, within ECD_04099 at 4365.839 kb on + strand, within ECD_04099 at 4365.840 kb on - strand, within ECD_04099 at 4365.891 kb on - strand, within ECD_04099 at 4365.952 kb on + strand, within ECD_04099 at 4365.991 kb on + strand, within ECD_04099 at 4365.991 kb on + strand, within ECD_04099 at 4365.994 kb on + strand, within ECD_04099 at 4366.038 kb on + strand, within ECD_04099 at 4366.038 kb on + strand, within ECD_04099 at 4366.038 kb on + strand, within ECD_04099 at 4366.038 kb on + strand, within ECD_04099 at 4366.038 kb on + strand, within ECD_04099 at 4366.038 kb on + strand, within ECD_04099 at 4366.039 kb on - strand, within ECD_04099 at 4366.039 kb on - strand, within ECD_04099 at 4366.039 kb on - strand, within ECD_04099 at 4366.039 kb on - strand, within ECD_04099 at 4366.039 kb on - strand, within ECD_04099 at 4366.039 kb on - strand, within ECD_04099 at 4366.039 kb on - strand, within ECD_04099 at 4366.039 kb on - strand, within ECD_04099 at 4366.039 kb on - strand, within ECD_04099 at 4366.040 kb on + strand, within ECD_04099 at 4366.117 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction EV152 remove 4,363,221 - ECD_04097 0.36 +0.6 4,363,221 - ECD_04097 0.36 +0.9 4,363,221 - ECD_04097 0.36 +0.6 4,363,221 - ECD_04097 0.36 -0.2 4,363,297 + ECD_04097 0.42 -0.9 4,363,520 + ECD_04097 0.56 +0.8 4,363,569 + ECD_04097 0.60 -0.8 4,363,746 + ECD_04097 0.71 +0.5 4,363,781 + ECD_04097 0.74 +0.1 4,363,782 - ECD_04097 0.74 -0.4 4,364,212 + +2.1 4,364,213 - -0.2 4,364,355 + ECD_04098 0.16 -0.2 4,364,356 - ECD_04098 0.16 -0.5 4,364,356 - ECD_04098 0.16 -2.0 4,364,565 + ECD_04098 0.37 -0.1 4,364,671 + ECD_04098 0.47 +0.3 4,364,873 + ECD_04098 0.67 -0.1 4,364,912 - ECD_04098 0.71 -0.2 4,365,025 + ECD_04098 0.82 +0.6 4,365,026 - ECD_04098 0.82 -0.5 4,365,058 + ECD_04098 0.85 -0.1 4,365,120 + +0.7 4,365,182 - +0.4 4,365,193 + -0.4 4,365,193 + +0.3 4,365,209 + +0.0 4,365,253 - -0.7 4,365,510 - ECD_04099 0.31 +1.5 4,365,548 + ECD_04099 0.35 +0.8 4,365,591 + ECD_04099 0.39 +0.2 4,365,592 - ECD_04099 0.40 -0.1 4,365,633 + ECD_04099 0.44 +0.1 4,365,682 + ECD_04099 0.49 +0.8 4,365,683 - ECD_04099 0.49 +0.5 4,365,725 + ECD_04099 0.53 -0.7 4,365,726 - ECD_04099 0.53 +0.1 4,365,763 + ECD_04099 0.57 -0.1 4,365,764 - ECD_04099 0.57 -0.2 4,365,764 - ECD_04099 0.57 -0.0 4,365,764 - ECD_04099 0.57 +0.7 4,365,765 + ECD_04099 0.57 -0.7 4,365,765 + ECD_04099 0.57 +0.9 4,365,766 - ECD_04099 0.57 -0.4 4,365,766 - ECD_04099 0.57 +0.1 4,365,828 - ECD_04099 0.63 +1.1 4,365,837 + ECD_04099 0.64 +0.9 4,365,838 - ECD_04099 0.64 +0.2 4,365,838 - ECD_04099 0.64 +0.7 4,365,838 - ECD_04099 0.64 -0.4 4,365,838 - ECD_04099 0.64 +1.0 4,365,839 + ECD_04099 0.64 +0.7 4,365,839 + ECD_04099 0.64 +0.6 4,365,839 + ECD_04099 0.64 -0.2 4,365,839 + ECD_04099 0.64 +0.0 4,365,839 + ECD_04099 0.64 -0.6 4,365,840 - ECD_04099 0.64 +0.3 4,365,891 - ECD_04099 0.70 +0.3 4,365,952 + ECD_04099 0.76 -0.0 4,365,991 + ECD_04099 0.80 +0.1 4,365,991 + ECD_04099 0.80 -0.3 4,365,994 + ECD_04099 0.80 +0.3 4,366,038 + ECD_04099 0.84 +0.1 4,366,038 + ECD_04099 0.84 -0.2 4,366,038 + ECD_04099 0.84 +0.9 4,366,038 + ECD_04099 0.84 -0.6 4,366,038 + ECD_04099 0.84 +0.3 4,366,038 + ECD_04099 0.84 +0.3 4,366,039 - ECD_04099 0.84 -0.1 4,366,039 - ECD_04099 0.84 +0.0 4,366,039 - ECD_04099 0.84 +0.4 4,366,039 - ECD_04099 0.84 -0.2 4,366,039 - ECD_04099 0.84 +1.3 4,366,039 - ECD_04099 0.84 -1.0 4,366,039 - ECD_04099 0.84 +0.1 4,366,039 - ECD_04099 0.84 +0.6 4,366,039 - ECD_04099 0.84 -1.3 4,366,040 + ECD_04099 0.85 -0.6 4,366,117 + +0.1
Or see this region's nucleotide sequence