Experiment: EV152
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_03959 and ECD_03960 are separated by 126 nucleotides ECD_03960 and ECD_03961 are separated by 58 nucleotides
ECD_03959: ECD_03959 - D-allose ABC transporter ATPase, at 4,216,635 to 4,218,167
_03959
ECD_03960: ECD_03960 - D-allose ABC transporter periplasmic binding protein, at 4,218,294 to 4,219,229
_03960
ECD_03961: ECD_03961 - d-allose-inducible als operon transcriptional repressor; autorepressor; repressor of rpiR, at 4,219,288 to 4,220,178
_03961
Position (kb)
4218
4219
4220 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 4217.295 kb on + strand, within ECD_03959 at 4217.315 kb on + strand, within ECD_03959 at 4217.315 kb on + strand, within ECD_03959 at 4217.316 kb on - strand, within ECD_03959 at 4217.316 kb on - strand, within ECD_03959 at 4217.459 kb on + strand, within ECD_03959 at 4217.481 kb on + strand, within ECD_03959 at 4217.481 kb on + strand, within ECD_03959 at 4217.482 kb on - strand, within ECD_03959 at 4217.482 kb on - strand, within ECD_03959 at 4217.484 kb on + strand, within ECD_03959 at 4217.485 kb on - strand, within ECD_03959 at 4217.568 kb on - strand, within ECD_03959 at 4217.568 kb on - strand, within ECD_03959 at 4217.569 kb on + strand, within ECD_03959 at 4217.620 kb on + strand, within ECD_03959 at 4217.620 kb on + strand, within ECD_03959 at 4217.706 kb on + strand, within ECD_03959 at 4217.727 kb on - strand, within ECD_03959 at 4217.751 kb on + strand, within ECD_03959 at 4217.752 kb on - strand, within ECD_03959 at 4217.823 kb on - strand, within ECD_03959 at 4217.966 kb on + strand, within ECD_03959 at 4218.061 kb on - strand at 4218.150 kb on + strand at 4218.152 kb on + strand at 4218.153 kb on - strand at 4218.266 kb on + strand at 4218.568 kb on + strand, within ECD_03960 at 4218.569 kb on - strand, within ECD_03960 at 4218.579 kb on - strand, within ECD_03960 at 4218.582 kb on - strand, within ECD_03960 at 4218.606 kb on - strand, within ECD_03960 at 4218.626 kb on + strand, within ECD_03960 at 4218.786 kb on - strand, within ECD_03960 at 4218.904 kb on + strand, within ECD_03960 at 4218.904 kb on + strand, within ECD_03960 at 4219.350 kb on + strand at 4219.568 kb on - strand, within ECD_03961 at 4219.598 kb on - strand, within ECD_03961 at 4219.676 kb on - strand, within ECD_03961 at 4219.703 kb on - strand, within ECD_03961 at 4219.717 kb on - strand, within ECD_03961 at 4219.832 kb on - strand, within ECD_03961 at 4219.843 kb on - strand, within ECD_03961 at 4219.843 kb on - strand, within ECD_03961 at 4219.843 kb on - strand, within ECD_03961 at 4219.847 kb on - strand, within ECD_03961 at 4219.847 kb on - strand, within ECD_03961 at 4219.852 kb on - strand, within ECD_03961 at 4219.901 kb on - strand, within ECD_03961 at 4219.901 kb on - strand, within ECD_03961 at 4219.923 kb on - strand, within ECD_03961 at 4219.943 kb on - strand, within ECD_03961 at 4219.943 kb on - strand, within ECD_03961 at 4219.943 kb on - strand, within ECD_03961 at 4219.983 kb on + strand, within ECD_03961 at 4219.983 kb on + strand, within ECD_03961 at 4219.984 kb on - strand, within ECD_03961 at 4219.984 kb on - strand, within ECD_03961 at 4220.028 kb on + strand, within ECD_03961 at 4220.029 kb on - strand, within ECD_03961 at 4220.029 kb on - strand, within ECD_03961 at 4220.029 kb on - strand, within ECD_03961 at 4220.124 kb on - strand at 4220.138 kb on - strand at 4220.138 kb on - strand at 4220.138 kb on - strand at 4220.138 kb on - strand at 4220.138 kb on - strand at 4220.140 kb on - strand at 4220.212 kb on + strand at 4220.213 kb on - strand at 4220.213 kb on - strand at 4220.214 kb on + strand at 4220.215 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction EV152 remove 4,217,295 + ECD_03959 0.43 -0.2 4,217,315 + ECD_03959 0.44 +0.5 4,217,315 + ECD_03959 0.44 -1.0 4,217,316 - ECD_03959 0.44 +0.1 4,217,316 - ECD_03959 0.44 -0.2 4,217,459 + ECD_03959 0.54 +1.8 4,217,481 + ECD_03959 0.55 +0.4 4,217,481 + ECD_03959 0.55 -0.2 4,217,482 - ECD_03959 0.55 +0.4 4,217,482 - ECD_03959 0.55 -0.3 4,217,484 + ECD_03959 0.55 -0.5 4,217,485 - ECD_03959 0.55 +0.2 4,217,568 - ECD_03959 0.61 +0.9 4,217,568 - ECD_03959 0.61 +0.2 4,217,569 + ECD_03959 0.61 +0.1 4,217,620 + ECD_03959 0.64 -2.3 4,217,620 + ECD_03959 0.64 +0.8 4,217,706 + ECD_03959 0.70 -0.2 4,217,727 - ECD_03959 0.71 -0.2 4,217,751 + ECD_03959 0.73 +0.8 4,217,752 - ECD_03959 0.73 -1.1 4,217,823 - ECD_03959 0.77 -0.1 4,217,966 + ECD_03959 0.87 +2.0 4,218,061 - +0.4 4,218,150 + +0.2 4,218,152 + +0.8 4,218,153 - +0.0 4,218,266 + -1.2 4,218,568 + ECD_03960 0.29 +1.1 4,218,569 - ECD_03960 0.29 -0.6 4,218,579 - ECD_03960 0.30 +1.2 4,218,582 - ECD_03960 0.31 +0.5 4,218,606 - ECD_03960 0.33 +0.2 4,218,626 + ECD_03960 0.35 +0.5 4,218,786 - ECD_03960 0.53 +0.5 4,218,904 + ECD_03960 0.65 +0.0 4,218,904 + ECD_03960 0.65 +3.4 4,219,350 + +1.2 4,219,568 - ECD_03961 0.31 -0.3 4,219,598 - ECD_03961 0.35 -0.7 4,219,676 - ECD_03961 0.44 -0.1 4,219,703 - ECD_03961 0.47 +0.5 4,219,717 - ECD_03961 0.48 -0.4 4,219,832 - ECD_03961 0.61 +0.2 4,219,843 - ECD_03961 0.62 -0.3 4,219,843 - ECD_03961 0.62 -0.2 4,219,843 - ECD_03961 0.62 +0.2 4,219,847 - ECD_03961 0.63 +0.9 4,219,847 - ECD_03961 0.63 +0.3 4,219,852 - ECD_03961 0.63 +0.1 4,219,901 - ECD_03961 0.69 -0.2 4,219,901 - ECD_03961 0.69 +0.6 4,219,923 - ECD_03961 0.71 -0.0 4,219,943 - ECD_03961 0.74 -0.2 4,219,943 - ECD_03961 0.74 -0.1 4,219,943 - ECD_03961 0.74 -0.2 4,219,983 + ECD_03961 0.78 -0.3 4,219,983 + ECD_03961 0.78 +1.4 4,219,984 - ECD_03961 0.78 +1.2 4,219,984 - ECD_03961 0.78 -0.7 4,220,028 + ECD_03961 0.83 +0.8 4,220,029 - ECD_03961 0.83 +1.8 4,220,029 - ECD_03961 0.83 -0.1 4,220,029 - ECD_03961 0.83 -0.2 4,220,124 - +1.9 4,220,138 - -0.1 4,220,138 - -0.6 4,220,138 - +0.5 4,220,138 - -0.2 4,220,138 - +0.4 4,220,140 - +0.0 4,220,212 + +0.0 4,220,213 - -0.2 4,220,213 - +1.6 4,220,214 + -0.3 4,220,215 - +2.0
Or see this region's nucleotide sequence