Strain Fitness in Escherichia coli BL21 around ECD_03960

Experiment: EV152

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_03959 and ECD_03960 are separated by 126 nucleotidesECD_03960 and ECD_03961 are separated by 58 nucleotides ECD_03959: ECD_03959 - D-allose ABC transporter ATPase, at 4,216,635 to 4,218,167 _03959 ECD_03960: ECD_03960 - D-allose ABC transporter periplasmic binding protein, at 4,218,294 to 4,219,229 _03960 ECD_03961: ECD_03961 - d-allose-inducible als operon transcriptional repressor; autorepressor; repressor of rpiR, at 4,219,288 to 4,220,178 _03961 Position (kb) 4218 4219 4220Strain fitness (log2 ratio) -2 -1 0 1 2 3at 4217.295 kb on + strand, within ECD_03959at 4217.315 kb on + strand, within ECD_03959at 4217.315 kb on + strand, within ECD_03959at 4217.316 kb on - strand, within ECD_03959at 4217.316 kb on - strand, within ECD_03959at 4217.459 kb on + strand, within ECD_03959at 4217.481 kb on + strand, within ECD_03959at 4217.481 kb on + strand, within ECD_03959at 4217.482 kb on - strand, within ECD_03959at 4217.482 kb on - strand, within ECD_03959at 4217.484 kb on + strand, within ECD_03959at 4217.485 kb on - strand, within ECD_03959at 4217.568 kb on - strand, within ECD_03959at 4217.568 kb on - strand, within ECD_03959at 4217.569 kb on + strand, within ECD_03959at 4217.620 kb on + strand, within ECD_03959at 4217.620 kb on + strand, within ECD_03959at 4217.706 kb on + strand, within ECD_03959at 4217.727 kb on - strand, within ECD_03959at 4217.751 kb on + strand, within ECD_03959at 4217.752 kb on - strand, within ECD_03959at 4217.823 kb on - strand, within ECD_03959at 4217.966 kb on + strand, within ECD_03959at 4218.061 kb on - strandat 4218.150 kb on + strandat 4218.152 kb on + strandat 4218.153 kb on - strandat 4218.266 kb on + strandat 4218.568 kb on + strand, within ECD_03960at 4218.569 kb on - strand, within ECD_03960at 4218.579 kb on - strand, within ECD_03960at 4218.582 kb on - strand, within ECD_03960at 4218.606 kb on - strand, within ECD_03960at 4218.626 kb on + strand, within ECD_03960at 4218.786 kb on - strand, within ECD_03960at 4218.904 kb on + strand, within ECD_03960at 4218.904 kb on + strand, within ECD_03960at 4219.350 kb on + strandat 4219.568 kb on - strand, within ECD_03961at 4219.598 kb on - strand, within ECD_03961at 4219.676 kb on - strand, within ECD_03961at 4219.703 kb on - strand, within ECD_03961at 4219.717 kb on - strand, within ECD_03961at 4219.832 kb on - strand, within ECD_03961at 4219.843 kb on - strand, within ECD_03961at 4219.843 kb on - strand, within ECD_03961at 4219.843 kb on - strand, within ECD_03961at 4219.847 kb on - strand, within ECD_03961at 4219.847 kb on - strand, within ECD_03961at 4219.852 kb on - strand, within ECD_03961at 4219.901 kb on - strand, within ECD_03961at 4219.901 kb on - strand, within ECD_03961at 4219.923 kb on - strand, within ECD_03961at 4219.943 kb on - strand, within ECD_03961at 4219.943 kb on - strand, within ECD_03961at 4219.943 kb on - strand, within ECD_03961at 4219.983 kb on + strand, within ECD_03961at 4219.983 kb on + strand, within ECD_03961at 4219.984 kb on - strand, within ECD_03961at 4219.984 kb on - strand, within ECD_03961at 4220.028 kb on + strand, within ECD_03961at 4220.029 kb on - strand, within ECD_03961at 4220.029 kb on - strand, within ECD_03961at 4220.029 kb on - strand, within ECD_03961at 4220.124 kb on - strandat 4220.138 kb on - strandat 4220.138 kb on - strandat 4220.138 kb on - strandat 4220.138 kb on - strandat 4220.138 kb on - strandat 4220.140 kb on - strandat 4220.212 kb on + strandat 4220.213 kb on - strandat 4220.213 kb on - strandat 4220.214 kb on + strandat 4220.215 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction EV152
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4,217,295 + ECD_03959 0.43 -0.2
4,217,315 + ECD_03959 0.44 +0.5
4,217,315 + ECD_03959 0.44 -1.0
4,217,316 - ECD_03959 0.44 +0.1
4,217,316 - ECD_03959 0.44 -0.2
4,217,459 + ECD_03959 0.54 +1.8
4,217,481 + ECD_03959 0.55 +0.4
4,217,481 + ECD_03959 0.55 -0.2
4,217,482 - ECD_03959 0.55 +0.4
4,217,482 - ECD_03959 0.55 -0.3
4,217,484 + ECD_03959 0.55 -0.5
4,217,485 - ECD_03959 0.55 +0.2
4,217,568 - ECD_03959 0.61 +0.9
4,217,568 - ECD_03959 0.61 +0.2
4,217,569 + ECD_03959 0.61 +0.1
4,217,620 + ECD_03959 0.64 -2.3
4,217,620 + ECD_03959 0.64 +0.8
4,217,706 + ECD_03959 0.70 -0.2
4,217,727 - ECD_03959 0.71 -0.2
4,217,751 + ECD_03959 0.73 +0.8
4,217,752 - ECD_03959 0.73 -1.1
4,217,823 - ECD_03959 0.77 -0.1
4,217,966 + ECD_03959 0.87 +2.0
4,218,061 - +0.4
4,218,150 + +0.2
4,218,152 + +0.8
4,218,153 - +0.0
4,218,266 + -1.2
4,218,568 + ECD_03960 0.29 +1.1
4,218,569 - ECD_03960 0.29 -0.6
4,218,579 - ECD_03960 0.30 +1.2
4,218,582 - ECD_03960 0.31 +0.5
4,218,606 - ECD_03960 0.33 +0.2
4,218,626 + ECD_03960 0.35 +0.5
4,218,786 - ECD_03960 0.53 +0.5
4,218,904 + ECD_03960 0.65 +0.0
4,218,904 + ECD_03960 0.65 +3.4
4,219,350 + +1.2
4,219,568 - ECD_03961 0.31 -0.3
4,219,598 - ECD_03961 0.35 -0.7
4,219,676 - ECD_03961 0.44 -0.1
4,219,703 - ECD_03961 0.47 +0.5
4,219,717 - ECD_03961 0.48 -0.4
4,219,832 - ECD_03961 0.61 +0.2
4,219,843 - ECD_03961 0.62 -0.3
4,219,843 - ECD_03961 0.62 -0.2
4,219,843 - ECD_03961 0.62 +0.2
4,219,847 - ECD_03961 0.63 +0.9
4,219,847 - ECD_03961 0.63 +0.3
4,219,852 - ECD_03961 0.63 +0.1
4,219,901 - ECD_03961 0.69 -0.2
4,219,901 - ECD_03961 0.69 +0.6
4,219,923 - ECD_03961 0.71 -0.0
4,219,943 - ECD_03961 0.74 -0.2
4,219,943 - ECD_03961 0.74 -0.1
4,219,943 - ECD_03961 0.74 -0.2
4,219,983 + ECD_03961 0.78 -0.3
4,219,983 + ECD_03961 0.78 +1.4
4,219,984 - ECD_03961 0.78 +1.2
4,219,984 - ECD_03961 0.78 -0.7
4,220,028 + ECD_03961 0.83 +0.8
4,220,029 - ECD_03961 0.83 +1.8
4,220,029 - ECD_03961 0.83 -0.1
4,220,029 - ECD_03961 0.83 -0.2
4,220,124 - +1.9
4,220,138 - -0.1
4,220,138 - -0.6
4,220,138 - +0.5
4,220,138 - -0.2
4,220,138 - +0.4
4,220,140 - +0.0
4,220,212 + +0.0
4,220,213 - -0.2
4,220,213 - +1.6
4,220,214 + -0.3
4,220,215 - +2.0

Or see this region's nucleotide sequence