Strain Fitness in Escherichia coli BL21 around ECD_03911

Experiment: EV152

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_03910 and ECD_03911 are separated by 222 nucleotidesECD_03911 and ECD_03912 are separated by 12 nucleotides ECD_03910: ECD_03910 - hypothetical protein, at 4,158,327 to 4,159,655 _03910 ECD_03911: ECD_03911 - chorismate--pyruvate lyase, at 4,159,878 to 4,160,375 _03911 ECD_03912: ECD_03912 - p-hydroxybenzoate octaprenyltransferase, at 4,160,388 to 4,161,260 _03912 Position (kb) 4159 4160 4161Strain fitness (log2 ratio) -2 -1 0 1 2at 4159.439 kb on + strand, within ECD_03910at 4159.440 kb on - strand, within ECD_03910at 4159.463 kb on - strand, within ECD_03910at 4159.469 kb on + strand, within ECD_03910at 4159.470 kb on - strand, within ECD_03910at 4159.509 kb on + strand, within ECD_03910at 4159.511 kb on + strand, within ECD_03910at 4159.587 kb on - strandat 4159.635 kb on - strandat 4159.635 kb on - strandat 4159.643 kb on + strandat 4159.657 kb on + strandat 4159.733 kb on + strandat 4159.740 kb on + strandat 4159.796 kb on - strandat 4159.804 kb on + strandat 4159.814 kb on + strandat 4159.853 kb on + strandat 4159.858 kb on + strandat 4159.858 kb on + strandat 4159.859 kb on - strandat 4159.862 kb on + strandat 4159.862 kb on + strandat 4160.119 kb on + strand, within ECD_03911at 4160.222 kb on - strand, within ECD_03911at 4160.230 kb on - strand, within ECD_03911at 4160.230 kb on - strand, within ECD_03911at 4160.272 kb on + strand, within ECD_03911at 4160.273 kb on - strand, within ECD_03911at 4160.273 kb on - strand, within ECD_03911at 4160.325 kb on - strand, within ECD_03911at 4160.370 kb on + strandat 4160.370 kb on + strandat 4160.371 kb on - strandat 4160.371 kb on - strandat 4160.373 kb on + strandat 4160.374 kb on - strandat 4160.374 kb on - strandat 4161.366 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction EV152
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4,159,439 + ECD_03910 0.84 -1.7
4,159,440 - ECD_03910 0.84 -1.5
4,159,463 - ECD_03910 0.85 +0.1
4,159,469 + ECD_03910 0.86 +0.8
4,159,470 - ECD_03910 0.86 -0.5
4,159,509 + ECD_03910 0.89 +0.2
4,159,511 + ECD_03910 0.89 +0.3
4,159,587 - +0.4
4,159,635 - -0.6
4,159,635 - +0.3
4,159,643 + +0.2
4,159,657 + -0.2
4,159,733 + +0.7
4,159,740 + +2.5
4,159,796 - -0.4
4,159,804 + +0.2
4,159,814 + -0.3
4,159,853 + +0.2
4,159,858 + -1.4
4,159,858 + -0.1
4,159,859 - -1.1
4,159,862 + -0.2
4,159,862 + +0.1
4,160,119 + ECD_03911 0.48 +1.2
4,160,222 - ECD_03911 0.69 -2.6
4,160,230 - ECD_03911 0.71 -0.8
4,160,230 - ECD_03911 0.71 -1.1
4,160,272 + ECD_03911 0.79 -0.6
4,160,273 - ECD_03911 0.79 -1.8
4,160,273 - ECD_03911 0.79 -1.4
4,160,325 - ECD_03911 0.90 +2.2
4,160,370 + +1.0
4,160,370 + -0.3
4,160,371 - +0.7
4,160,371 - -0.5
4,160,373 + -0.0
4,160,374 - -1.4
4,160,374 - -0.6
4,161,366 - -0.5

Or see this region's nucleotide sequence