Strain Fitness in Escherichia coli BL21 around ECD_03040

Experiment: EV152

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_03039 and ECD_t00058 are separated by 458 nucleotidesECD_t00058 and ECD_03040 are separated by 14 nucleotidesECD_03040 and ECD_03041 are separated by 227 nucleotides ECD_03039: ECD_03039 - putative EptAB family phosphoethanolamine transferase, inner membrane protein, at 3,188,487 to 3,190,112 _03039 ECD_t00058: ECD_t00058 - tRNA-Leu, at 3,190,571 to 3,190,657 _t00058 ECD_03040: ECD_03040 - preprotein translocase membrane subunit, at 3,190,672 to 3,191,004 _03040 ECD_03041: ECD_03041 - phosphoglucosamine mutase, at 3,191,232 to 3,192,569 _03041 Position (kb) 3190 3191 3192Strain fitness (log2 ratio) -2 -1 0 1 2at 3189.778 kb on + strand, within ECD_03039at 3189.863 kb on + strand, within ECD_03039at 3189.874 kb on + strand, within ECD_03039at 3189.874 kb on + strand, within ECD_03039at 3189.881 kb on + strand, within ECD_03039at 3189.884 kb on + strand, within ECD_03039at 3189.884 kb on + strand, within ECD_03039at 3189.951 kb on + strandat 3189.952 kb on - strandat 3189.954 kb on - strandat 3189.954 kb on - strandat 3189.961 kb on - strandat 3189.961 kb on - strandat 3190.035 kb on - strandat 3190.261 kb on + strandat 3190.358 kb on - strandat 3190.404 kb on + strandat 3190.427 kb on + strandat 3190.433 kb on + strandat 3190.433 kb on + strandat 3190.494 kb on - strandat 3190.494 kb on - strandat 3190.667 kb on - strandat 3190.667 kb on - strandat 3190.783 kb on - strand, within ECD_03040at 3190.930 kb on - strand, within ECD_03040at 3190.975 kb on - strandat 3190.975 kb on - strandat 3190.988 kb on - strandat 3191.001 kb on - strandat 3191.005 kb on - strandat 3191.005 kb on - strandat 3191.036 kb on - strandat 3191.222 kb on - strandat 3191.226 kb on - strandat 3191.245 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction EV152
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3,189,778 + ECD_03039 0.79 -0.3
3,189,863 + ECD_03039 0.85 -1.0
3,189,874 + ECD_03039 0.85 +0.5
3,189,874 + ECD_03039 0.85 +0.6
3,189,881 + ECD_03039 0.86 +0.9
3,189,884 + ECD_03039 0.86 -0.8
3,189,884 + ECD_03039 0.86 +0.2
3,189,951 + -0.1
3,189,952 - +1.2
3,189,954 - -0.7
3,189,954 - +0.1
3,189,961 - +0.5
3,189,961 - +1.8
3,190,035 - +1.4
3,190,261 + -0.7
3,190,358 - +0.3
3,190,404 + +0.3
3,190,427 + +0.7
3,190,433 + +1.2
3,190,433 + -0.6
3,190,494 - -1.0
3,190,494 - +0.0
3,190,667 - -0.4
3,190,667 - -1.3
3,190,783 - ECD_03040 0.33 -1.4
3,190,930 - ECD_03040 0.77 -0.9
3,190,975 - -1.7
3,190,975 - -1.3
3,190,988 - +0.6
3,191,001 - -2.4
3,191,005 - -0.8
3,191,005 - -2.5
3,191,036 - -0.8
3,191,222 - +0.2
3,191,226 - +0.3
3,191,245 - -0.3

Or see this region's nucleotide sequence