Experiment: EV152
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_03039 and ECD_t00058 are separated by 458 nucleotides ECD_t00058 and ECD_03040 are separated by 14 nucleotides ECD_03040 and ECD_03041 are separated by 227 nucleotides
ECD_03039: ECD_03039 - putative EptAB family phosphoethanolamine transferase, inner membrane protein, at 3,188,487 to 3,190,112
_03039
ECD_t00058: ECD_t00058 - tRNA-Leu, at 3,190,571 to 3,190,657
_t00058
ECD_03040: ECD_03040 - preprotein translocase membrane subunit, at 3,190,672 to 3,191,004
_03040
ECD_03041: ECD_03041 - phosphoglucosamine mutase, at 3,191,232 to 3,192,569
_03041
Position (kb)
3190
3191
3192 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3189.778 kb on + strand, within ECD_03039 at 3189.863 kb on + strand, within ECD_03039 at 3189.874 kb on + strand, within ECD_03039 at 3189.874 kb on + strand, within ECD_03039 at 3189.881 kb on + strand, within ECD_03039 at 3189.884 kb on + strand, within ECD_03039 at 3189.884 kb on + strand, within ECD_03039 at 3189.951 kb on + strand at 3189.952 kb on - strand at 3189.954 kb on - strand at 3189.954 kb on - strand at 3189.961 kb on - strand at 3189.961 kb on - strand at 3190.035 kb on - strand at 3190.261 kb on + strand at 3190.358 kb on - strand at 3190.404 kb on + strand at 3190.427 kb on + strand at 3190.433 kb on + strand at 3190.433 kb on + strand at 3190.494 kb on - strand at 3190.494 kb on - strand at 3190.667 kb on - strand at 3190.667 kb on - strand at 3190.783 kb on - strand, within ECD_03040 at 3190.930 kb on - strand, within ECD_03040 at 3190.975 kb on - strand at 3190.975 kb on - strand at 3190.988 kb on - strand at 3191.001 kb on - strand at 3191.005 kb on - strand at 3191.005 kb on - strand at 3191.036 kb on - strand at 3191.222 kb on - strand at 3191.226 kb on - strand at 3191.245 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction EV152 remove 3,189,778 + ECD_03039 0.79 -0.3 3,189,863 + ECD_03039 0.85 -1.0 3,189,874 + ECD_03039 0.85 +0.5 3,189,874 + ECD_03039 0.85 +0.6 3,189,881 + ECD_03039 0.86 +0.9 3,189,884 + ECD_03039 0.86 -0.8 3,189,884 + ECD_03039 0.86 +0.2 3,189,951 + -0.1 3,189,952 - +1.2 3,189,954 - -0.7 3,189,954 - +0.1 3,189,961 - +0.5 3,189,961 - +1.8 3,190,035 - +1.4 3,190,261 + -0.7 3,190,358 - +0.3 3,190,404 + +0.3 3,190,427 + +0.7 3,190,433 + +1.2 3,190,433 + -0.6 3,190,494 - -1.0 3,190,494 - +0.0 3,190,667 - -0.4 3,190,667 - -1.3 3,190,783 - ECD_03040 0.33 -1.4 3,190,930 - ECD_03040 0.77 -0.9 3,190,975 - -1.7 3,190,975 - -1.3 3,190,988 - +0.6 3,191,001 - -2.4 3,191,005 - -0.8 3,191,005 - -2.5 3,191,036 - -0.8 3,191,222 - +0.2 3,191,226 - +0.3 3,191,245 - -0.3
Or see this region's nucleotide sequence