Experiment: EV152
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02939 and ECD_02940 are separated by 287 nucleotides ECD_02940 and ECD_02941 are separated by 153 nucleotides
ECD_02939: ECD_02939 - putative siderophore interacting protein, at 3,081,809 to 3,082,573
_02939
ECD_02940: ECD_02940 - PadR family putative transcriptional regulator, at 3,082,861 to 3,083,484
_02940
ECD_02941: ECD_02941 - fused signal transducer for aerotaxis sensory component/methyl accepting chemotaxis component, at 3,083,638 to 3,085,158
_02941
Position (kb)
3082
3083
3084 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3081.899 kb on - strand, within ECD_02939 at 3081.924 kb on + strand, within ECD_02939 at 3081.924 kb on + strand, within ECD_02939 at 3081.925 kb on - strand, within ECD_02939 at 3082.000 kb on + strand, within ECD_02939 at 3082.024 kb on - strand, within ECD_02939 at 3082.063 kb on + strand, within ECD_02939 at 3082.063 kb on + strand, within ECD_02939 at 3082.143 kb on + strand, within ECD_02939 at 3082.143 kb on + strand, within ECD_02939 at 3082.143 kb on + strand, within ECD_02939 at 3082.143 kb on + strand, within ECD_02939 at 3082.143 kb on + strand, within ECD_02939 at 3082.143 kb on + strand, within ECD_02939 at 3082.144 kb on - strand, within ECD_02939 at 3082.144 kb on - strand, within ECD_02939 at 3082.144 kb on - strand, within ECD_02939 at 3082.144 kb on - strand, within ECD_02939 at 3082.144 kb on - strand, within ECD_02939 at 3082.144 kb on - strand, within ECD_02939 at 3082.202 kb on - strand, within ECD_02939 at 3082.202 kb on - strand, within ECD_02939 at 3082.262 kb on - strand, within ECD_02939 at 3082.289 kb on + strand, within ECD_02939 at 3082.290 kb on - strand, within ECD_02939 at 3082.300 kb on - strand, within ECD_02939 at 3082.300 kb on - strand, within ECD_02939 at 3082.311 kb on + strand, within ECD_02939 at 3082.311 kb on + strand, within ECD_02939 at 3082.439 kb on - strand, within ECD_02939 at 3082.505 kb on + strand at 3082.665 kb on - strand at 3082.679 kb on + strand at 3082.681 kb on + strand at 3082.719 kb on + strand at 3082.720 kb on - strand at 3082.720 kb on - strand at 3082.720 kb on - strand at 3082.758 kb on + strand at 3082.887 kb on + strand at 3083.048 kb on + strand, within ECD_02940 at 3083.048 kb on + strand, within ECD_02940 at 3083.048 kb on + strand, within ECD_02940 at 3083.048 kb on + strand, within ECD_02940 at 3083.123 kb on + strand, within ECD_02940 at 3083.137 kb on + strand, within ECD_02940 at 3083.161 kb on + strand, within ECD_02940 at 3083.466 kb on + strand at 3083.469 kb on + strand at 3083.469 kb on + strand at 3083.469 kb on + strand at 3083.469 kb on + strand at 3083.560 kb on - strand at 3083.580 kb on - strand at 3083.580 kb on - strand at 3083.640 kb on - strand at 3083.647 kb on + strand at 3083.812 kb on - strand, within ECD_02941 at 3083.857 kb on - strand, within ECD_02941 at 3083.884 kb on + strand, within ECD_02941 at 3083.910 kb on + strand, within ECD_02941 at 3083.910 kb on + strand, within ECD_02941 at 3083.971 kb on + strand, within ECD_02941 at 3084.096 kb on + strand, within ECD_02941 at 3084.096 kb on + strand, within ECD_02941 at 3084.097 kb on - strand, within ECD_02941 at 3084.097 kb on - strand, within ECD_02941 at 3084.097 kb on - strand, within ECD_02941 at 3084.387 kb on + strand, within ECD_02941 at 3084.387 kb on + strand, within ECD_02941 at 3084.388 kb on - strand, within ECD_02941 at 3084.388 kb on - strand, within ECD_02941 at 3084.388 kb on - strand, within ECD_02941 at 3084.391 kb on + strand, within ECD_02941 at 3084.430 kb on + strand, within ECD_02941 at 3084.430 kb on + strand, within ECD_02941 at 3084.431 kb on - strand, within ECD_02941 at 3084.475 kb on - strand, within ECD_02941 at 3084.475 kb on - strand, within ECD_02941 at 3084.477 kb on + strand, within ECD_02941 at 3084.478 kb on - strand, within ECD_02941 at 3084.478 kb on - strand, within ECD_02941
Per-strain Table
Position Strand Gene LocusTag Fraction EV152 remove 3,081,899 - ECD_02939 0.12 +2.2 3,081,924 + ECD_02939 0.15 +0.0 3,081,924 + ECD_02939 0.15 -0.1 3,081,925 - ECD_02939 0.15 +0.7 3,082,000 + ECD_02939 0.25 -0.8 3,082,024 - ECD_02939 0.28 -0.2 3,082,063 + ECD_02939 0.33 -0.5 3,082,063 + ECD_02939 0.33 +0.2 3,082,143 + ECD_02939 0.44 -0.3 3,082,143 + ECD_02939 0.44 +1.2 3,082,143 + ECD_02939 0.44 +1.2 3,082,143 + ECD_02939 0.44 +0.2 3,082,143 + ECD_02939 0.44 -0.4 3,082,143 + ECD_02939 0.44 -0.8 3,082,144 - ECD_02939 0.44 +0.7 3,082,144 - ECD_02939 0.44 +0.1 3,082,144 - ECD_02939 0.44 +0.5 3,082,144 - ECD_02939 0.44 -1.8 3,082,144 - ECD_02939 0.44 +1.4 3,082,144 - ECD_02939 0.44 -0.3 3,082,202 - ECD_02939 0.51 +0.2 3,082,202 - ECD_02939 0.51 +0.0 3,082,262 - ECD_02939 0.59 +0.1 3,082,289 + ECD_02939 0.63 +0.6 3,082,290 - ECD_02939 0.63 -1.4 3,082,300 - ECD_02939 0.64 +1.5 3,082,300 - ECD_02939 0.64 -0.5 3,082,311 + ECD_02939 0.66 +0.1 3,082,311 + ECD_02939 0.66 -0.1 3,082,439 - ECD_02939 0.82 -0.4 3,082,505 + -0.4 3,082,665 - -0.1 3,082,679 + -2.5 3,082,681 + +0.0 3,082,719 + +0.2 3,082,720 - -1.2 3,082,720 - -0.8 3,082,720 - -1.1 3,082,758 + +1.7 3,082,887 + +1.2 3,083,048 + ECD_02940 0.30 +0.2 3,083,048 + ECD_02940 0.30 -0.7 3,083,048 + ECD_02940 0.30 -0.7 3,083,048 + ECD_02940 0.30 -0.5 3,083,123 + ECD_02940 0.42 -1.4 3,083,137 + ECD_02940 0.44 -0.9 3,083,161 + ECD_02940 0.48 +0.2 3,083,466 + -0.3 3,083,469 + +0.3 3,083,469 + +0.4 3,083,469 + +0.2 3,083,469 + +1.3 3,083,560 - +0.2 3,083,580 - +0.9 3,083,580 - -0.8 3,083,640 - -1.4 3,083,647 + -0.1 3,083,812 - ECD_02941 0.11 -0.5 3,083,857 - ECD_02941 0.14 -0.6 3,083,884 + ECD_02941 0.16 -2.7 3,083,910 + ECD_02941 0.18 +1.2 3,083,910 + ECD_02941 0.18 -0.8 3,083,971 + ECD_02941 0.22 +0.7 3,084,096 + ECD_02941 0.30 -0.8 3,084,096 + ECD_02941 0.30 -0.3 3,084,097 - ECD_02941 0.30 -0.3 3,084,097 - ECD_02941 0.30 +1.3 3,084,097 - ECD_02941 0.30 -0.2 3,084,387 + ECD_02941 0.49 +0.2 3,084,387 + ECD_02941 0.49 -1.2 3,084,388 - ECD_02941 0.49 +0.5 3,084,388 - ECD_02941 0.49 +0.9 3,084,388 - ECD_02941 0.49 -0.8 3,084,391 + ECD_02941 0.50 -0.4 3,084,430 + ECD_02941 0.52 +0.3 3,084,430 + ECD_02941 0.52 +0.6 3,084,431 - ECD_02941 0.52 +2.0 3,084,475 - ECD_02941 0.55 -0.8 3,084,475 - ECD_02941 0.55 +0.4 3,084,477 + ECD_02941 0.55 -0.3 3,084,478 - ECD_02941 0.55 +0.0 3,084,478 - ECD_02941 0.55 -0.0
Or see this region's nucleotide sequence