Strain Fitness in Escherichia coli BL21 around ECD_02940

Experiment: EV152

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntECD_02939 and ECD_02940 are separated by 287 nucleotidesECD_02940 and ECD_02941 are separated by 153 nucleotides ECD_02939: ECD_02939 - putative siderophore interacting protein, at 3,081,809 to 3,082,573 _02939 ECD_02940: ECD_02940 - PadR family putative transcriptional regulator, at 3,082,861 to 3,083,484 _02940 ECD_02941: ECD_02941 - fused signal transducer for aerotaxis sensory component/methyl accepting chemotaxis component, at 3,083,638 to 3,085,158 _02941 Position (kb) 3082 3083 3084Strain fitness (log2 ratio) -2 -1 0 1 2at 3081.899 kb on - strand, within ECD_02939at 3081.924 kb on + strand, within ECD_02939at 3081.924 kb on + strand, within ECD_02939at 3081.925 kb on - strand, within ECD_02939at 3082.000 kb on + strand, within ECD_02939at 3082.024 kb on - strand, within ECD_02939at 3082.063 kb on + strand, within ECD_02939at 3082.063 kb on + strand, within ECD_02939at 3082.143 kb on + strand, within ECD_02939at 3082.143 kb on + strand, within ECD_02939at 3082.143 kb on + strand, within ECD_02939at 3082.143 kb on + strand, within ECD_02939at 3082.143 kb on + strand, within ECD_02939at 3082.143 kb on + strand, within ECD_02939at 3082.144 kb on - strand, within ECD_02939at 3082.144 kb on - strand, within ECD_02939at 3082.144 kb on - strand, within ECD_02939at 3082.144 kb on - strand, within ECD_02939at 3082.144 kb on - strand, within ECD_02939at 3082.144 kb on - strand, within ECD_02939at 3082.202 kb on - strand, within ECD_02939at 3082.202 kb on - strand, within ECD_02939at 3082.262 kb on - strand, within ECD_02939at 3082.289 kb on + strand, within ECD_02939at 3082.290 kb on - strand, within ECD_02939at 3082.300 kb on - strand, within ECD_02939at 3082.300 kb on - strand, within ECD_02939at 3082.311 kb on + strand, within ECD_02939at 3082.311 kb on + strand, within ECD_02939at 3082.439 kb on - strand, within ECD_02939at 3082.505 kb on + strandat 3082.665 kb on - strandat 3082.679 kb on + strandat 3082.681 kb on + strandat 3082.719 kb on + strandat 3082.720 kb on - strandat 3082.720 kb on - strandat 3082.720 kb on - strandat 3082.758 kb on + strandat 3082.887 kb on + strandat 3083.048 kb on + strand, within ECD_02940at 3083.048 kb on + strand, within ECD_02940at 3083.048 kb on + strand, within ECD_02940at 3083.048 kb on + strand, within ECD_02940at 3083.123 kb on + strand, within ECD_02940at 3083.137 kb on + strand, within ECD_02940at 3083.161 kb on + strand, within ECD_02940at 3083.466 kb on + strandat 3083.469 kb on + strandat 3083.469 kb on + strandat 3083.469 kb on + strandat 3083.469 kb on + strandat 3083.560 kb on - strandat 3083.580 kb on - strandat 3083.580 kb on - strandat 3083.640 kb on - strandat 3083.647 kb on + strandat 3083.812 kb on - strand, within ECD_02941at 3083.857 kb on - strand, within ECD_02941at 3083.884 kb on + strand, within ECD_02941at 3083.910 kb on + strand, within ECD_02941at 3083.910 kb on + strand, within ECD_02941at 3083.971 kb on + strand, within ECD_02941at 3084.096 kb on + strand, within ECD_02941at 3084.096 kb on + strand, within ECD_02941at 3084.097 kb on - strand, within ECD_02941at 3084.097 kb on - strand, within ECD_02941at 3084.097 kb on - strand, within ECD_02941at 3084.387 kb on + strand, within ECD_02941at 3084.387 kb on + strand, within ECD_02941at 3084.388 kb on - strand, within ECD_02941at 3084.388 kb on - strand, within ECD_02941at 3084.388 kb on - strand, within ECD_02941at 3084.391 kb on + strand, within ECD_02941at 3084.430 kb on + strand, within ECD_02941at 3084.430 kb on + strand, within ECD_02941at 3084.431 kb on - strand, within ECD_02941at 3084.475 kb on - strand, within ECD_02941at 3084.475 kb on - strand, within ECD_02941at 3084.477 kb on + strand, within ECD_02941at 3084.478 kb on - strand, within ECD_02941at 3084.478 kb on - strand, within ECD_02941

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction EV152
remove
3,081,899 - ECD_02939 0.12 +2.2
3,081,924 + ECD_02939 0.15 +0.0
3,081,924 + ECD_02939 0.15 -0.1
3,081,925 - ECD_02939 0.15 +0.7
3,082,000 + ECD_02939 0.25 -0.8
3,082,024 - ECD_02939 0.28 -0.2
3,082,063 + ECD_02939 0.33 -0.5
3,082,063 + ECD_02939 0.33 +0.2
3,082,143 + ECD_02939 0.44 -0.3
3,082,143 + ECD_02939 0.44 +1.2
3,082,143 + ECD_02939 0.44 +1.2
3,082,143 + ECD_02939 0.44 +0.2
3,082,143 + ECD_02939 0.44 -0.4
3,082,143 + ECD_02939 0.44 -0.8
3,082,144 - ECD_02939 0.44 +0.7
3,082,144 - ECD_02939 0.44 +0.1
3,082,144 - ECD_02939 0.44 +0.5
3,082,144 - ECD_02939 0.44 -1.8
3,082,144 - ECD_02939 0.44 +1.4
3,082,144 - ECD_02939 0.44 -0.3
3,082,202 - ECD_02939 0.51 +0.2
3,082,202 - ECD_02939 0.51 +0.0
3,082,262 - ECD_02939 0.59 +0.1
3,082,289 + ECD_02939 0.63 +0.6
3,082,290 - ECD_02939 0.63 -1.4
3,082,300 - ECD_02939 0.64 +1.5
3,082,300 - ECD_02939 0.64 -0.5
3,082,311 + ECD_02939 0.66 +0.1
3,082,311 + ECD_02939 0.66 -0.1
3,082,439 - ECD_02939 0.82 -0.4
3,082,505 + -0.4
3,082,665 - -0.1
3,082,679 + -2.5
3,082,681 + +0.0
3,082,719 + +0.2
3,082,720 - -1.2
3,082,720 - -0.8
3,082,720 - -1.1
3,082,758 + +1.7
3,082,887 + +1.2
3,083,048 + ECD_02940 0.30 +0.2
3,083,048 + ECD_02940 0.30 -0.7
3,083,048 + ECD_02940 0.30 -0.7
3,083,048 + ECD_02940 0.30 -0.5
3,083,123 + ECD_02940 0.42 -1.4
3,083,137 + ECD_02940 0.44 -0.9
3,083,161 + ECD_02940 0.48 +0.2
3,083,466 + -0.3
3,083,469 + +0.3
3,083,469 + +0.4
3,083,469 + +0.2
3,083,469 + +1.3
3,083,560 - +0.2
3,083,580 - +0.9
3,083,580 - -0.8
3,083,640 - -1.4
3,083,647 + -0.1
3,083,812 - ECD_02941 0.11 -0.5
3,083,857 - ECD_02941 0.14 -0.6
3,083,884 + ECD_02941 0.16 -2.7
3,083,910 + ECD_02941 0.18 +1.2
3,083,910 + ECD_02941 0.18 -0.8
3,083,971 + ECD_02941 0.22 +0.7
3,084,096 + ECD_02941 0.30 -0.8
3,084,096 + ECD_02941 0.30 -0.3
3,084,097 - ECD_02941 0.30 -0.3
3,084,097 - ECD_02941 0.30 +1.3
3,084,097 - ECD_02941 0.30 -0.2
3,084,387 + ECD_02941 0.49 +0.2
3,084,387 + ECD_02941 0.49 -1.2
3,084,388 - ECD_02941 0.49 +0.5
3,084,388 - ECD_02941 0.49 +0.9
3,084,388 - ECD_02941 0.49 -0.8
3,084,391 + ECD_02941 0.50 -0.4
3,084,430 + ECD_02941 0.52 +0.3
3,084,430 + ECD_02941 0.52 +0.6
3,084,431 - ECD_02941 0.52 +2.0
3,084,475 - ECD_02941 0.55 -0.8
3,084,475 - ECD_02941 0.55 +0.4
3,084,477 + ECD_02941 0.55 -0.3
3,084,478 - ECD_02941 0.55 +0.0
3,084,478 - ECD_02941 0.55 -0.0

Or see this region's nucleotide sequence