Strain Fitness in Escherichia coli BL21 around ECD_02517

Experiment: EV152

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_02516 and ECD_02517 are separated by 22 nucleotidesECD_02517 and ECD_02518 are separated by 13 nucleotides ECD_02516: ECD_02516 - L-2-hydroxyglutarate oxidase, at 2,629,769 to 2,631,037 _02516 ECD_02517: ECD_02517 - succinate-semialdehyde dehydrogenase I, NADP-dependent, at 2,631,060 to 2,632,508 _02517 ECD_02518: ECD_02518 - 4-aminobutyrate aminotransferase, PLP-dependent, at 2,632,522 to 2,633,802 _02518 Position (kb) 2631 2632 2633Strain fitness (log2 ratio) -2 -1 0 1 2at 2630.263 kb on + strand, within ECD_02516at 2630.264 kb on - strand, within ECD_02516at 2630.267 kb on + strand, within ECD_02516at 2630.267 kb on + strand, within ECD_02516at 2630.299 kb on + strand, within ECD_02516at 2630.299 kb on + strand, within ECD_02516at 2630.316 kb on + strand, within ECD_02516at 2630.316 kb on + strand, within ECD_02516at 2630.316 kb on + strand, within ECD_02516at 2630.320 kb on + strand, within ECD_02516at 2630.359 kb on + strand, within ECD_02516at 2630.359 kb on + strand, within ECD_02516at 2630.444 kb on + strand, within ECD_02516at 2630.445 kb on - strand, within ECD_02516at 2630.492 kb on + strand, within ECD_02516at 2630.685 kb on + strand, within ECD_02516at 2630.685 kb on + strand, within ECD_02516at 2630.685 kb on + strand, within ECD_02516at 2630.685 kb on + strand, within ECD_02516at 2630.685 kb on + strand, within ECD_02516at 2630.685 kb on + strand, within ECD_02516at 2630.685 kb on + strand, within ECD_02516at 2630.686 kb on - strand, within ECD_02516at 2630.686 kb on - strand, within ECD_02516at 2630.686 kb on - strand, within ECD_02516at 2630.686 kb on - strand, within ECD_02516at 2630.732 kb on + strand, within ECD_02516at 2630.753 kb on + strand, within ECD_02516at 2630.753 kb on + strand, within ECD_02516at 2630.753 kb on + strand, within ECD_02516at 2630.753 kb on + strand, within ECD_02516at 2630.753 kb on + strand, within ECD_02516at 2630.753 kb on + strand, within ECD_02516at 2630.753 kb on + strand, within ECD_02516at 2630.753 kb on + strand, within ECD_02516at 2630.753 kb on + strand, within ECD_02516at 2630.754 kb on - strand, within ECD_02516at 2630.930 kb on + strandat 2630.930 kb on + strandat 2630.930 kb on + strandat 2630.930 kb on + strandat 2630.930 kb on + strandat 2630.930 kb on + strandat 2630.930 kb on + strandat 2630.931 kb on - strandat 2630.931 kb on - strandat 2630.931 kb on - strandat 2630.931 kb on - strandat 2630.931 kb on - strandat 2630.932 kb on + strandat 2630.932 kb on + strandat 2630.932 kb on + strandat 2630.932 kb on + strandat 2630.933 kb on - strandat 2630.946 kb on + strandat 2630.946 kb on + strandat 2630.946 kb on + strandat 2630.947 kb on - strandat 2630.971 kb on + strandat 2630.971 kb on + strandat 2630.971 kb on + strandat 2630.972 kb on - strandat 2631.001 kb on + strandat 2631.001 kb on + strandat 2631.001 kb on + strandat 2631.001 kb on + strandat 2631.001 kb on + strandat 2631.001 kb on + strandat 2631.001 kb on + strandat 2631.001 kb on + strandat 2631.001 kb on + strandat 2631.002 kb on - strandat 2631.002 kb on - strandat 2631.002 kb on - strandat 2631.002 kb on - strandat 2631.002 kb on - strandat 2631.002 kb on - strandat 2631.002 kb on - strandat 2631.002 kb on - strandat 2631.002 kb on - strandat 2631.002 kb on - strandat 2631.002 kb on - strandat 2631.002 kb on - strandat 2631.002 kb on - strandat 2631.016 kb on - strandat 2631.029 kb on - strandat 2631.029 kb on - strandat 2631.056 kb on - strandat 2631.077 kb on + strandat 2631.077 kb on + strandat 2631.082 kb on + strandat 2631.083 kb on - strandat 2631.347 kb on - strand, within ECD_02517at 2631.391 kb on - strand, within ECD_02517at 2631.404 kb on + strand, within ECD_02517at 2631.438 kb on + strand, within ECD_02517at 2631.438 kb on + strand, within ECD_02517at 2631.438 kb on + strand, within ECD_02517at 2631.439 kb on - strand, within ECD_02517at 2631.673 kb on + strand, within ECD_02517at 2631.673 kb on + strand, within ECD_02517at 2631.677 kb on + strand, within ECD_02517at 2631.677 kb on + strand, within ECD_02517at 2631.678 kb on - strand, within ECD_02517at 2631.678 kb on - strand, within ECD_02517at 2631.678 kb on - strand, within ECD_02517at 2631.678 kb on - strand, within ECD_02517at 2631.781 kb on + strand, within ECD_02517at 2631.945 kb on + strand, within ECD_02517at 2631.945 kb on + strand, within ECD_02517at 2631.945 kb on + strand, within ECD_02517at 2631.945 kb on + strand, within ECD_02517at 2631.945 kb on + strand, within ECD_02517at 2631.945 kb on + strand, within ECD_02517at 2631.964 kb on - strand, within ECD_02517at 2631.964 kb on - strand, within ECD_02517at 2631.964 kb on - strand, within ECD_02517at 2631.964 kb on - strand, within ECD_02517at 2632.088 kb on + strand, within ECD_02517at 2632.308 kb on + strand, within ECD_02517at 2632.308 kb on + strand, within ECD_02517at 2632.315 kb on - strand, within ECD_02517at 2632.315 kb on - strand, within ECD_02517at 2632.327 kb on + strand, within ECD_02517at 2632.327 kb on + strand, within ECD_02517at 2632.392 kb on - strandat 2632.459 kb on - strandat 2632.488 kb on + strandat 2632.488 kb on + strandat 2632.488 kb on + strandat 2632.491 kb on - strandat 2632.533 kb on + strandat 2632.648 kb on + strandat 2632.648 kb on + strandat 2632.648 kb on + strandat 2632.648 kb on + strandat 2632.768 kb on + strand, within ECD_02518at 2632.768 kb on + strand, within ECD_02518at 2632.769 kb on - strand, within ECD_02518at 2632.777 kb on + strand, within ECD_02518at 2632.777 kb on + strand, within ECD_02518at 2632.778 kb on - strand, within ECD_02518at 2632.778 kb on - strand, within ECD_02518at 2632.778 kb on - strand, within ECD_02518at 2632.778 kb on - strand, within ECD_02518at 2632.797 kb on + strand, within ECD_02518at 2632.798 kb on - strand, within ECD_02518at 2632.923 kb on + strand, within ECD_02518at 2632.951 kb on + strand, within ECD_02518at 2632.984 kb on + strand, within ECD_02518at 2633.032 kb on + strand, within ECD_02518at 2633.055 kb on - strand, within ECD_02518at 2633.055 kb on - strand, within ECD_02518at 2633.055 kb on - strand, within ECD_02518at 2633.164 kb on + strand, within ECD_02518at 2633.165 kb on - strand, within ECD_02518at 2633.184 kb on + strand, within ECD_02518at 2633.184 kb on + strand, within ECD_02518at 2633.184 kb on + strand, within ECD_02518at 2633.185 kb on - strand, within ECD_02518at 2633.185 kb on - strand, within ECD_02518at 2633.311 kb on - strand, within ECD_02518at 2633.375 kb on + strand, within ECD_02518at 2633.413 kb on + strand, within ECD_02518at 2633.413 kb on + strand, within ECD_02518at 2633.413 kb on + strand, within ECD_02518at 2633.414 kb on - strand, within ECD_02518at 2633.414 kb on - strand, within ECD_02518

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Per-strain Table

Position Strand Gene LocusTag Fraction EV152
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2,630,263 + ECD_02516 0.39 +0.4
2,630,264 - ECD_02516 0.39 -0.0
2,630,267 + ECD_02516 0.39 -0.6
2,630,267 + ECD_02516 0.39 +0.9
2,630,299 + ECD_02516 0.42 +1.9
2,630,299 + ECD_02516 0.42 -0.4
2,630,316 + ECD_02516 0.43 +0.5
2,630,316 + ECD_02516 0.43 -0.8
2,630,316 + ECD_02516 0.43 +0.3
2,630,320 + ECD_02516 0.43 +0.3
2,630,359 + ECD_02516 0.46 +1.6
2,630,359 + ECD_02516 0.46 -0.4
2,630,444 + ECD_02516 0.53 +0.1
2,630,445 - ECD_02516 0.53 +0.9
2,630,492 + ECD_02516 0.57 +0.0
2,630,685 + ECD_02516 0.72 +0.2
2,630,685 + ECD_02516 0.72 -0.3
2,630,685 + ECD_02516 0.72 -1.4
2,630,685 + ECD_02516 0.72 +0.7
2,630,685 + ECD_02516 0.72 -0.2
2,630,685 + ECD_02516 0.72 +0.1
2,630,685 + ECD_02516 0.72 -1.4
2,630,686 - ECD_02516 0.72 -1.9
2,630,686 - ECD_02516 0.72 +0.4
2,630,686 - ECD_02516 0.72 -0.4
2,630,686 - ECD_02516 0.72 -1.3
2,630,732 + ECD_02516 0.76 +0.7
2,630,753 + ECD_02516 0.78 +0.2
2,630,753 + ECD_02516 0.78 +1.1
2,630,753 + ECD_02516 0.78 -1.0
2,630,753 + ECD_02516 0.78 +0.1
2,630,753 + ECD_02516 0.78 +0.6
2,630,753 + ECD_02516 0.78 +1.1
2,630,753 + ECD_02516 0.78 -0.1
2,630,753 + ECD_02516 0.78 +0.9
2,630,753 + ECD_02516 0.78 -0.7
2,630,754 - ECD_02516 0.78 +0.0
2,630,930 + +0.7
2,630,930 + -0.8
2,630,930 + -0.5
2,630,930 + -0.6
2,630,930 + -0.9
2,630,930 + -0.6
2,630,930 + -0.8
2,630,931 - -1.9
2,630,931 - +0.9
2,630,931 - +1.6
2,630,931 - -0.8
2,630,931 - +0.1
2,630,932 + +0.5
2,630,932 + +0.7
2,630,932 + +1.4
2,630,932 + +0.0
2,630,933 - +0.5
2,630,946 + +0.2
2,630,946 + -0.3
2,630,946 + +0.0
2,630,947 - +0.1
2,630,971 + -1.1
2,630,971 + -1.3
2,630,971 + -0.9
2,630,972 - -0.4
2,631,001 + +0.0
2,631,001 + +0.5
2,631,001 + +0.2
2,631,001 + +0.0
2,631,001 + -0.1
2,631,001 + +1.1
2,631,001 + +1.1
2,631,001 + -0.7
2,631,001 + -0.0
2,631,002 - -0.2
2,631,002 - -0.5
2,631,002 - -1.1
2,631,002 - -0.3
2,631,002 - +0.5
2,631,002 - +1.5
2,631,002 - +0.1
2,631,002 - -0.3
2,631,002 - +0.6
2,631,002 - +1.6
2,631,002 - -0.7
2,631,002 - -0.3
2,631,002 - -0.1
2,631,016 - -0.1
2,631,029 - +1.2
2,631,029 - +1.0
2,631,056 - -0.2
2,631,077 + +1.2
2,631,077 + +1.5
2,631,082 + +1.0
2,631,083 - -0.6
2,631,347 - ECD_02517 0.20 -1.3
2,631,391 - ECD_02517 0.23 +1.4
2,631,404 + ECD_02517 0.24 -1.6
2,631,438 + ECD_02517 0.26 -0.6
2,631,438 + ECD_02517 0.26 -0.0
2,631,438 + ECD_02517 0.26 +0.4
2,631,439 - ECD_02517 0.26 -0.7
2,631,673 + ECD_02517 0.42 -1.0
2,631,673 + ECD_02517 0.42 -1.0
2,631,677 + ECD_02517 0.43 -0.1
2,631,677 + ECD_02517 0.43 +0.1
2,631,678 - ECD_02517 0.43 -1.7
2,631,678 - ECD_02517 0.43 -0.4
2,631,678 - ECD_02517 0.43 +0.9
2,631,678 - ECD_02517 0.43 -0.7
2,631,781 + ECD_02517 0.50 -0.1
2,631,945 + ECD_02517 0.61 -0.1
2,631,945 + ECD_02517 0.61 +0.0
2,631,945 + ECD_02517 0.61 -0.7
2,631,945 + ECD_02517 0.61 +0.8
2,631,945 + ECD_02517 0.61 +0.6
2,631,945 + ECD_02517 0.61 +0.2
2,631,964 - ECD_02517 0.62 +0.9
2,631,964 - ECD_02517 0.62 -0.3
2,631,964 - ECD_02517 0.62 -0.1
2,631,964 - ECD_02517 0.62 +0.5
2,632,088 + ECD_02517 0.71 +0.3
2,632,308 + ECD_02517 0.86 -0.7
2,632,308 + ECD_02517 0.86 -0.2
2,632,315 - ECD_02517 0.87 -0.5
2,632,315 - ECD_02517 0.87 -0.1
2,632,327 + ECD_02517 0.87 -0.6
2,632,327 + ECD_02517 0.87 -1.1
2,632,392 - -0.3
2,632,459 - -1.1
2,632,488 + -1.1
2,632,488 + +0.3
2,632,488 + -0.1
2,632,491 - +0.1
2,632,533 + +0.5
2,632,648 + -0.4
2,632,648 + -0.1
2,632,648 + +0.1
2,632,648 + -0.6
2,632,768 + ECD_02518 0.19 -0.4
2,632,768 + ECD_02518 0.19 -0.3
2,632,769 - ECD_02518 0.19 +1.7
2,632,777 + ECD_02518 0.20 +2.6
2,632,777 + ECD_02518 0.20 -0.4
2,632,778 - ECD_02518 0.20 -1.8
2,632,778 - ECD_02518 0.20 -0.7
2,632,778 - ECD_02518 0.20 +0.5
2,632,778 - ECD_02518 0.20 -0.4
2,632,797 + ECD_02518 0.21 -0.0
2,632,798 - ECD_02518 0.22 -2.3
2,632,923 + ECD_02518 0.31 +0.1
2,632,951 + ECD_02518 0.33 +0.4
2,632,984 + ECD_02518 0.36 -0.6
2,633,032 + ECD_02518 0.40 +0.9
2,633,055 - ECD_02518 0.42 +1.3
2,633,055 - ECD_02518 0.42 +0.0
2,633,055 - ECD_02518 0.42 +0.0
2,633,164 + ECD_02518 0.50 -0.1
2,633,165 - ECD_02518 0.50 -0.7
2,633,184 + ECD_02518 0.52 +2.2
2,633,184 + ECD_02518 0.52 -1.1
2,633,184 + ECD_02518 0.52 -0.0
2,633,185 - ECD_02518 0.52 -0.9
2,633,185 - ECD_02518 0.52 +0.8
2,633,311 - ECD_02518 0.62 +0.3
2,633,375 + ECD_02518 0.67 -2.6
2,633,413 + ECD_02518 0.70 +0.9
2,633,413 + ECD_02518 0.70 -0.8
2,633,413 + ECD_02518 0.70 +0.3
2,633,414 - ECD_02518 0.70 +0.3
2,633,414 - ECD_02518 0.70 +0.4

Or see this region's nucleotide sequence