Experiment: EV152
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_01625 and ECD_01626 are separated by 127 nucleotides ECD_01626 and ECD_01627 are separated by 234 nucleotides ECD_01627 and ECD_01628 are separated by 165 nucleotides ECD_01628 and ECD_01629 are separated by 268 nucleotides
ECD_01625: ECD_01625 - murein DD-endopeptidase, space-maker hydrolase, at 1,679,631 to 1,680,446
_01625
ECD_01626: ECD_01626 - superoxide dismutase, Fe, at 1,680,574 to 1,681,155
_01626
ECD_01627: ECD_01627 - putative MFS transporter, inner membrane protein, at 1,681,390 to 1,682,559
_01627
ECD_01628: ECD_01628 - putative transporter, at 1,682,725 to 1,682,844
_01628
ECD_01629: ECD_01629 - transcriptional repressor, hypoxanthine-binding, at 1,683,113 to 1,684,138
_01629
Position (kb)
1681
1682
1683 Strain fitness (log2 ratio)
-1
0
1
2 at 1680.556 kb on + strand at 1681.063 kb on + strand, within ECD_01626 at 1681.063 kb on + strand, within ECD_01626 at 1681.678 kb on - strand, within ECD_01627 at 1681.891 kb on - strand, within ECD_01627 at 1681.893 kb on - strand, within ECD_01627 at 1681.893 kb on - strand, within ECD_01627 at 1682.017 kb on - strand, within ECD_01627 at 1682.283 kb on - strand, within ECD_01627 at 1682.958 kb on + strand at 1682.963 kb on + strand at 1683.132 kb on + strand at 1683.132 kb on + strand at 1683.132 kb on + strand at 1683.157 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction EV152 remove 1,680,556 + -1.3 1,681,063 + ECD_01626 0.84 -0.2 1,681,063 + ECD_01626 0.84 +0.2 1,681,678 - ECD_01627 0.25 +0.5 1,681,891 - ECD_01627 0.43 +0.0 1,681,893 - ECD_01627 0.43 +0.5 1,681,893 - ECD_01627 0.43 +0.8 1,682,017 - ECD_01627 0.54 -0.6 1,682,283 - ECD_01627 0.76 +0.8 1,682,958 + +0.9 1,682,963 + -0.2 1,683,132 + +2.1 1,683,132 + -1.4 1,683,132 + +1.2 1,683,157 + -1.2
Or see this region's nucleotide sequence