Strain Fitness in Escherichia coli BL21 around ECD_01572

Experiment: EV152

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_01571 and ECD_01572 are separated by 10 nucleotidesECD_01572 and ECD_01573 are separated by 523 nucleotides ECD_01571: ECD_01571 - pyridine nucleotide transhydrogenase, beta subunit, at 1,620,169 to 1,621,557 _01571 ECD_01572: ECD_01572 - pyridine nucleotide transhydrogenase, alpha subunit, at 1,621,568 to 1,623,100 _01572 ECD_01573: ECD_01573 - DUF1471 family periplasmic protein, at 1,623,624 to 1,624,568 _01573 Position (kb) 1621 1622 1623 1624Strain fitness (log2 ratio) -1 0 1 2at 1620.784 kb on - strand, within ECD_01571at 1620.784 kb on - strand, within ECD_01571at 1620.856 kb on - strand, within ECD_01571at 1621.285 kb on - strand, within ECD_01571at 1621.530 kb on - strandat 1621.540 kb on - strandat 1621.558 kb on - strandat 1621.751 kb on - strand, within ECD_01572at 1622.221 kb on - strand, within ECD_01572at 1622.221 kb on - strand, within ECD_01572at 1622.304 kb on - strand, within ECD_01572at 1622.799 kb on - strand, within ECD_01572at 1622.918 kb on - strand, within ECD_01572at 1623.087 kb on - strandat 1623.123 kb on - strandat 1623.591 kb on + strandat 1623.742 kb on + strand, within ECD_01573at 1623.742 kb on + strand, within ECD_01573at 1623.761 kb on + strand, within ECD_01573

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Per-strain Table

Position Strand Gene LocusTag Fraction EV152
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1,620,784 - ECD_01571 0.44 +0.8
1,620,784 - ECD_01571 0.44 -0.2
1,620,856 - ECD_01571 0.49 -0.8
1,621,285 - ECD_01571 0.80 -0.2
1,621,530 - -0.5
1,621,540 - +0.6
1,621,558 - +2.1
1,621,751 - ECD_01572 0.12 -0.1
1,622,221 - ECD_01572 0.43 +0.0
1,622,221 - ECD_01572 0.43 +0.8
1,622,304 - ECD_01572 0.48 -0.5
1,622,799 - ECD_01572 0.80 +1.3
1,622,918 - ECD_01572 0.88 +0.8
1,623,087 - -0.8
1,623,123 - +0.5
1,623,591 + +0.8
1,623,742 + ECD_01573 0.12 +0.3
1,623,742 + ECD_01573 0.12 +0.8
1,623,761 + ECD_01573 0.14 +0.8

Or see this region's nucleotide sequence