Experiment: EV152
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00076 and ECD_00077 are separated by 92 nucleotides ECD_00077 and ECD_00078 are separated by 659 nucleotides
ECD_00076: ECD_00076 - 2-isopropylmalate synthase, at 84,763 to 86,334
_00076
ECD_00077: ECD_00077 - leu operon leader peptide, at 86,427 to 86,513
_00077
ECD_00078: ECD_00078 - global transcription factor, at 87,173 to 88,117
_00078
Position (kb) 86
87 Strain fitness (log2 ratio) -1
0
1 at 85.500 kb on + strand, within ECD_00076 at 85.504 kb on - strand, within ECD_00076 at 85.519 kb on + strand, within ECD_00076 at 85.519 kb on + strand, within ECD_00076 at 85.520 kb on - strand, within ECD_00076 at 85.538 kb on - strand, within ECD_00076 at 85.552 kb on - strand, within ECD_00076 at 85.715 kb on - strand, within ECD_00076 at 85.728 kb on + strand, within ECD_00076 at 85.740 kb on + strand, within ECD_00076 at 85.759 kb on - strand, within ECD_00076 at 85.772 kb on + strand, within ECD_00076 at 85.814 kb on + strand, within ECD_00076 at 85.815 kb on - strand, within ECD_00076 at 85.964 kb on + strand, within ECD_00076 at 85.964 kb on + strand, within ECD_00076 at 85.965 kb on - strand, within ECD_00076 at 85.965 kb on - strand, within ECD_00076 at 85.965 kb on - strand, within ECD_00076 at 85.965 kb on - strand, within ECD_00076 at 86.037 kb on + strand, within ECD_00076 at 86.044 kb on - strand, within ECD_00076 at 86.050 kb on - strand, within ECD_00076 at 86.116 kb on + strand, within ECD_00076 at 86.125 kb on + strand, within ECD_00076 at 86.126 kb on - strand, within ECD_00076 at 86.224 kb on - strand at 86.378 kb on - strand at 86.482 kb on - strand, within ECD_00077 at 86.482 kb on - strand, within ECD_00077 at 86.482 kb on - strand, within ECD_00077 at 86.482 kb on - strand, within ECD_00077 at 86.482 kb on - strand, within ECD_00077 at 86.482 kb on - strand, within ECD_00077 at 86.485 kb on - strand, within ECD_00077 at 86.485 kb on - strand, within ECD_00077 at 86.632 kb on + strand at 86.980 kb on + strand at 87.150 kb on + strand at 87.168 kb on + strand at 87.168 kb on + strand at 87.172 kb on + strand at 87.249 kb on + strand at 87.249 kb on + strand at 87.250 kb on - strand at 87.250 kb on - strand at 87.398 kb on - strand, within ECD_00078 at 87.459 kb on + strand, within ECD_00078
Per-strain Table
Position Strand Gene LocusTag Fraction EV152 remove 85,500 + ECD_00076 0.47 +0.3 85,504 - ECD_00076 0.47 +0.6 85,519 + ECD_00076 0.48 +0.2 85,519 + ECD_00076 0.48 -0.1 85,520 - ECD_00076 0.48 +0.4 85,538 - ECD_00076 0.49 +0.3 85,552 - ECD_00076 0.50 -0.1 85,715 - ECD_00076 0.61 -0.5 85,728 + ECD_00076 0.61 -0.2 85,740 + ECD_00076 0.62 +1.0 85,759 - ECD_00076 0.63 +0.3 85,772 + ECD_00076 0.64 -0.4 85,814 + ECD_00076 0.67 +0.7 85,815 - ECD_00076 0.67 -0.5 85,964 + ECD_00076 0.76 -1.4 85,964 + ECD_00076 0.76 -0.3 85,965 - ECD_00076 0.76 -0.2 85,965 - ECD_00076 0.76 +0.0 85,965 - ECD_00076 0.76 -0.3 85,965 - ECD_00076 0.76 -0.6 86,037 + ECD_00076 0.81 +0.7 86,044 - ECD_00076 0.81 +1.2 86,050 - ECD_00076 0.82 +0.9 86,116 + ECD_00076 0.86 +1.2 86,125 + ECD_00076 0.87 +0.5 86,126 - ECD_00076 0.87 -1.4 86,224 - -1.3 86,378 - +0.4 86,482 - ECD_00077 0.63 -0.3 86,482 - ECD_00077 0.63 +0.8 86,482 - ECD_00077 0.63 -1.5 86,482 - ECD_00077 0.63 -0.1 86,482 - ECD_00077 0.63 +0.4 86,482 - ECD_00077 0.63 -0.5 86,485 - ECD_00077 0.67 +0.6 86,485 - ECD_00077 0.67 -0.2 86,632 + -0.1 86,980 + -0.7 87,150 + -0.1 87,168 + -1.0 87,168 + -0.5 87,172 + -1.0 87,249 + -0.1 87,249 + +0.4 87,250 - +0.0 87,250 - -1.3 87,398 - ECD_00078 0.24 +0.1 87,459 + ECD_00078 0.30 -1.6
Or see this region's nucleotide sequence