Experiment: MelonXylem
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS24825 and viaA are separated by 199 nucleotides viaA and ravA overlap by 4 nucleotides
LU632_RS24825: LU632_RS24825 - IS91 family transposase, at 4,730,044 to 4,731,267
_RS24825
LU632_RS24830: viaA - ATPase RavA stimulator ViaA, at 4,731,467 to 4,732,930
viaA
LU632_RS24835: ravA - ATPase RavA, at 4,732,927 to 4,734,420
ravA
Position (kb) 4731
4732
4733 Strain fitness (log2 ratio) -1
0
1 at 4731.418 kb on + strand at 4731.418 kb on + strand at 4731.419 kb on - strand at 4731.422 kb on + strand at 4731.423 kb on - strand at 4731.430 kb on + strand at 4731.430 kb on + strand at 4731.431 kb on - strand at 4731.437 kb on + strand at 4731.523 kb on + strand at 4731.541 kb on + strand at 4731.541 kb on + strand at 4731.616 kb on + strand, within viaA at 4731.664 kb on + strand, within viaA at 4731.664 kb on + strand, within viaA at 4731.669 kb on - strand, within viaA at 4731.811 kb on - strand, within viaA at 4731.811 kb on - strand, within viaA at 4731.952 kb on + strand, within viaA at 4731.953 kb on - strand, within viaA at 4732.041 kb on + strand, within viaA at 4732.042 kb on - strand, within viaA at 4732.346 kb on + strand, within viaA at 4732.535 kb on + strand, within viaA at 4732.582 kb on + strand, within viaA at 4732.582 kb on + strand, within viaA at 4732.638 kb on + strand, within viaA at 4732.661 kb on + strand, within viaA at 4732.661 kb on + strand, within viaA at 4732.910 kb on + strand at 4732.910 kb on + strand at 4732.911 kb on - strand at 4733.178 kb on + strand, within ravA at 4733.184 kb on + strand, within ravA at 4733.185 kb on - strand, within ravA at 4733.233 kb on + strand, within ravA at 4733.234 kb on - strand, within ravA at 4733.302 kb on - strand, within ravA at 4733.302 kb on - strand, within ravA at 4733.302 kb on - strand, within ravA at 4733.560 kb on + strand, within ravA at 4733.560 kb on + strand, within ravA at 4733.560 kb on + strand, within ravA at 4733.560 kb on + strand, within ravA at 4733.560 kb on + strand, within ravA at 4733.560 kb on + strand, within ravA at 4733.560 kb on + strand, within ravA at 4733.561 kb on - strand, within ravA at 4733.561 kb on - strand, within ravA at 4733.561 kb on - strand, within ravA at 4733.628 kb on - strand, within ravA at 4733.682 kb on + strand, within ravA at 4733.684 kb on + strand, within ravA at 4733.789 kb on + strand, within ravA at 4733.805 kb on + strand, within ravA
Per-strain Table
Position Strand Gene LocusTag Fraction MelonXylem remove 4,731,418 + +0.0 4,731,418 + -0.2 4,731,419 - +1.0 4,731,422 + -0.3 4,731,423 - -0.2 4,731,430 + -0.1 4,731,430 + -0.2 4,731,431 - -0.8 4,731,437 + -0.7 4,731,523 + +0.5 4,731,541 + +0.5 4,731,541 + -0.8 4,731,616 + viaA LU632_RS24830 0.10 -0.1 4,731,664 + viaA LU632_RS24830 0.13 -0.4 4,731,664 + viaA LU632_RS24830 0.13 -0.4 4,731,669 - viaA LU632_RS24830 0.14 -0.4 4,731,811 - viaA LU632_RS24830 0.23 -1.1 4,731,811 - viaA LU632_RS24830 0.23 +0.1 4,731,952 + viaA LU632_RS24830 0.33 -0.4 4,731,953 - viaA LU632_RS24830 0.33 +0.1 4,732,041 + viaA LU632_RS24830 0.39 -0.3 4,732,042 - viaA LU632_RS24830 0.39 +0.5 4,732,346 + viaA LU632_RS24830 0.60 -0.9 4,732,535 + viaA LU632_RS24830 0.73 -0.1 4,732,582 + viaA LU632_RS24830 0.76 +0.3 4,732,582 + viaA LU632_RS24830 0.76 +0.6 4,732,638 + viaA LU632_RS24830 0.80 -0.4 4,732,661 + viaA LU632_RS24830 0.82 +0.5 4,732,661 + viaA LU632_RS24830 0.82 -0.5 4,732,910 + +0.4 4,732,910 + -0.7 4,732,911 - +0.5 4,733,178 + ravA LU632_RS24835 0.17 -0.0 4,733,184 + ravA LU632_RS24835 0.17 -0.0 4,733,185 - ravA LU632_RS24835 0.17 +0.1 4,733,233 + ravA LU632_RS24835 0.20 +0.8 4,733,234 - ravA LU632_RS24835 0.21 +0.3 4,733,302 - ravA LU632_RS24835 0.25 +0.3 4,733,302 - ravA LU632_RS24835 0.25 +0.3 4,733,302 - ravA LU632_RS24835 0.25 -0.8 4,733,560 + ravA LU632_RS24835 0.42 -0.0 4,733,560 + ravA LU632_RS24835 0.42 -0.3 4,733,560 + ravA LU632_RS24835 0.42 -0.1 4,733,560 + ravA LU632_RS24835 0.42 -0.4 4,733,560 + ravA LU632_RS24835 0.42 -0.4 4,733,560 + ravA LU632_RS24835 0.42 -1.4 4,733,560 + ravA LU632_RS24835 0.42 -0.0 4,733,561 - ravA LU632_RS24835 0.42 -0.1 4,733,561 - ravA LU632_RS24835 0.42 -1.5 4,733,561 - ravA LU632_RS24835 0.42 -0.1 4,733,628 - ravA LU632_RS24835 0.47 -0.1 4,733,682 + ravA LU632_RS24835 0.51 -0.4 4,733,684 + ravA LU632_RS24835 0.51 -0.5 4,733,789 + ravA LU632_RS24835 0.58 -0.0 4,733,805 + ravA LU632_RS24835 0.59 +0.4
Or see this region's nucleotide sequence