Experiment: MelonXylem
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS22915 and hslR are separated by 130 nucleotides hslR and hslO are separated by 22 nucleotides hslO and pckA are separated by 339 nucleotides
LU632_RS22915: LU632_RS22915 - intracellular growth attenuator family protein, at 4,363,325 to 4,365,463
_RS22915
LU632_RS22920: hslR - ribosome-associated heat shock protein Hsp15, at 4,365,594 to 4,365,995
hslR
LU632_RS22925: hslO - Hsp33 family molecular chaperone HslO, at 4,366,018 to 4,366,896
hslO
LU632_RS22930: pckA - phosphoenolpyruvate carboxykinase (ATP), at 4,367,236 to 4,368,849
pckA
Position (kb) 4366
4367 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4365.409 kb on + strand at 4365.476 kb on + strand at 4365.476 kb on + strand at 4365.482 kb on - strand at 4365.523 kb on - strand at 4365.567 kb on + strand at 4365.568 kb on - strand at 4365.568 kb on - strand at 4365.654 kb on + strand, within hslR at 4365.705 kb on + strand, within hslR at 4365.705 kb on + strand, within hslR at 4365.705 kb on + strand, within hslR at 4365.705 kb on + strand, within hslR at 4365.705 kb on + strand, within hslR at 4365.739 kb on + strand, within hslR at 4365.739 kb on + strand, within hslR at 4365.847 kb on - strand, within hslR at 4365.847 kb on - strand, within hslR at 4366.018 kb on - strand at 4366.060 kb on + strand at 4366.060 kb on + strand at 4366.060 kb on + strand at 4366.223 kb on + strand, within hslO at 4366.444 kb on + strand, within hslO at 4366.445 kb on - strand, within hslO at 4366.445 kb on - strand, within hslO at 4366.483 kb on - strand, within hslO at 4366.620 kb on - strand, within hslO at 4366.640 kb on + strand, within hslO at 4366.641 kb on - strand, within hslO at 4366.739 kb on + strand, within hslO at 4366.964 kb on - strand at 4367.117 kb on - strand at 4367.117 kb on - strand at 4367.232 kb on + strand at 4367.233 kb on - strand at 4367.233 kb on - strand at 4367.233 kb on - strand at 4367.233 kb on - strand at 4367.235 kb on - strand at 4367.433 kb on + strand, within pckA at 4367.433 kb on + strand, within pckA at 4367.433 kb on + strand, within pckA at 4367.433 kb on + strand, within pckA at 4367.433 kb on + strand, within pckA at 4367.434 kb on - strand, within pckA at 4367.437 kb on + strand, within pckA at 4367.437 kb on + strand, within pckA at 4367.604 kb on + strand, within pckA at 4367.806 kb on - strand, within pckA at 4367.810 kb on + strand, within pckA at 4367.887 kb on + strand, within pckA at 4367.887 kb on + strand, within pckA at 4367.887 kb on + strand, within pckA at 4367.888 kb on - strand, within pckA at 4367.888 kb on - strand, within pckA
Per-strain Table
Position Strand Gene LocusTag Fraction MelonXylem remove 4,365,409 + -3.4 4,365,476 + -0.3 4,365,476 + -0.2 4,365,482 - +0.2 4,365,523 - +0.7 4,365,567 + -0.3 4,365,568 - -1.1 4,365,568 - -0.5 4,365,654 + hslR LU632_RS22920 0.15 +0.1 4,365,705 + hslR LU632_RS22920 0.28 -2.0 4,365,705 + hslR LU632_RS22920 0.28 -0.0 4,365,705 + hslR LU632_RS22920 0.28 -0.8 4,365,705 + hslR LU632_RS22920 0.28 +0.2 4,365,705 + hslR LU632_RS22920 0.28 -0.3 4,365,739 + hslR LU632_RS22920 0.36 +0.1 4,365,739 + hslR LU632_RS22920 0.36 +1.3 4,365,847 - hslR LU632_RS22920 0.63 -0.3 4,365,847 - hslR LU632_RS22920 0.63 +1.2 4,366,018 - +0.0 4,366,060 + +2.2 4,366,060 + -0.3 4,366,060 + -0.3 4,366,223 + hslO LU632_RS22925 0.23 -0.4 4,366,444 + hslO LU632_RS22925 0.48 -0.2 4,366,445 - hslO LU632_RS22925 0.49 +0.2 4,366,445 - hslO LU632_RS22925 0.49 -0.4 4,366,483 - hslO LU632_RS22925 0.53 -0.3 4,366,620 - hslO LU632_RS22925 0.68 -0.0 4,366,640 + hslO LU632_RS22925 0.71 +1.6 4,366,641 - hslO LU632_RS22925 0.71 +0.4 4,366,739 + hslO LU632_RS22925 0.82 -1.3 4,366,964 - -0.7 4,367,117 - -2.4 4,367,117 - -0.6 4,367,232 + -2.0 4,367,233 - -3.3 4,367,233 - -2.5 4,367,233 - -0.4 4,367,233 - -1.7 4,367,235 - -0.4 4,367,433 + pckA LU632_RS22930 0.12 -0.7 4,367,433 + pckA LU632_RS22930 0.12 -1.5 4,367,433 + pckA LU632_RS22930 0.12 -1.0 4,367,433 + pckA LU632_RS22930 0.12 -2.0 4,367,433 + pckA LU632_RS22930 0.12 -1.4 4,367,434 - pckA LU632_RS22930 0.12 -3.4 4,367,437 + pckA LU632_RS22930 0.12 -0.0 4,367,437 + pckA LU632_RS22930 0.12 -2.5 4,367,604 + pckA LU632_RS22930 0.23 -1.6 4,367,806 - pckA LU632_RS22930 0.35 -1.5 4,367,810 + pckA LU632_RS22930 0.36 -2.7 4,367,887 + pckA LU632_RS22930 0.40 -0.8 4,367,887 + pckA LU632_RS22930 0.40 -0.7 4,367,887 + pckA LU632_RS22930 0.40 -1.0 4,367,888 - pckA LU632_RS22930 0.40 -3.4 4,367,888 - pckA LU632_RS22930 0.40 -1.6
Or see this region's nucleotide sequence