Experiment: MelonXylem
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt menD and menH overlap by 4 nucleotides menH and menB are separated by 9 nucleotides menB and menC overlap by 1 nucleotides
LU632_RS08105: menD - 2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylic-acid synthase, at 1,516,531 to 1,518,192
menD
LU632_RS08110: menH - 2-succinyl-6-hydroxy-2, 4-cyclohexadiene-1-carboxylate synthase, at 1,518,189 to 1,518,953
menH
LU632_RS08115: menB - 1,4-dihydroxy-2-naphthoyl-CoA synthase, at 1,518,963 to 1,519,820
menB
LU632_RS08120: menC - o-succinylbenzoate synthase, at 1,519,820 to 1,520,791
menC
Position (kb) 1518
1519 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 1517.412 kb on + strand, within menD at 1517.412 kb on + strand, within menD at 1517.413 kb on - strand, within menD at 1517.489 kb on - strand, within menD at 1517.517 kb on + strand, within menD at 1517.758 kb on + strand, within menD at 1517.759 kb on - strand, within menD at 1517.759 kb on - strand, within menD at 1517.959 kb on - strand, within menD at 1518.052 kb on + strand at 1518.053 kb on - strand at 1518.053 kb on - strand at 1518.053 kb on - strand at 1518.055 kb on + strand at 1518.140 kb on + strand at 1518.395 kb on - strand, within menH at 1518.395 kb on - strand, within menH at 1518.395 kb on - strand, within menH at 1518.471 kb on + strand, within menH at 1518.471 kb on + strand, within menH at 1518.472 kb on - strand, within menH at 1518.472 kb on - strand, within menH at 1518.472 kb on - strand, within menH at 1518.472 kb on - strand, within menH at 1518.475 kb on - strand, within menH at 1518.532 kb on - strand, within menH at 1518.548 kb on + strand, within menH at 1518.637 kb on - strand, within menH at 1518.662 kb on + strand, within menH at 1518.942 kb on - strand at 1518.942 kb on - strand at 1518.942 kb on - strand at 1518.951 kb on + strand at 1519.003 kb on + strand at 1519.243 kb on - strand, within menB at 1519.270 kb on + strand, within menB at 1519.271 kb on - strand, within menB at 1519.271 kb on - strand, within menB at 1519.271 kb on - strand, within menB at 1519.271 kb on - strand, within menB at 1519.271 kb on - strand, within menB at 1519.271 kb on - strand, within menB at 1519.394 kb on + strand, within menB at 1519.439 kb on - strand, within menB at 1519.470 kb on + strand, within menB at 1519.470 kb on + strand, within menB at 1519.470 kb on + strand, within menB at 1519.470 kb on + strand, within menB at 1519.471 kb on - strand, within menB at 1519.471 kb on - strand, within menB at 1519.471 kb on - strand, within menB at 1519.526 kb on - strand, within menB at 1519.530 kb on + strand, within menB at 1519.531 kb on - strand, within menB at 1519.531 kb on - strand, within menB at 1519.735 kb on - strand at 1519.735 kb on - strand at 1519.845 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MelonXylem remove 1,517,412 + menD LU632_RS08105 0.53 +0.8 1,517,412 + menD LU632_RS08105 0.53 +0.6 1,517,413 - menD LU632_RS08105 0.53 +0.5 1,517,489 - menD LU632_RS08105 0.58 -0.3 1,517,517 + menD LU632_RS08105 0.59 +0.6 1,517,758 + menD LU632_RS08105 0.74 +0.8 1,517,759 - menD LU632_RS08105 0.74 -0.7 1,517,759 - menD LU632_RS08105 0.74 +0.6 1,517,959 - menD LU632_RS08105 0.86 +0.2 1,518,052 + +0.9 1,518,053 - -0.2 1,518,053 - -0.0 1,518,053 - -3.0 1,518,055 + +0.4 1,518,140 + -0.4 1,518,395 - menH LU632_RS08110 0.27 -0.0 1,518,395 - menH LU632_RS08110 0.27 +0.5 1,518,395 - menH LU632_RS08110 0.27 -1.8 1,518,471 + menH LU632_RS08110 0.37 -1.1 1,518,471 + menH LU632_RS08110 0.37 -1.9 1,518,472 - menH LU632_RS08110 0.37 -0.7 1,518,472 - menH LU632_RS08110 0.37 +0.2 1,518,472 - menH LU632_RS08110 0.37 +0.3 1,518,472 - menH LU632_RS08110 0.37 +0.3 1,518,475 - menH LU632_RS08110 0.37 +0.3 1,518,532 - menH LU632_RS08110 0.45 +0.4 1,518,548 + menH LU632_RS08110 0.47 -0.1 1,518,637 - menH LU632_RS08110 0.59 -1.2 1,518,662 + menH LU632_RS08110 0.62 +0.7 1,518,942 - -0.1 1,518,942 - +0.8 1,518,942 - -0.1 1,518,951 + -2.0 1,519,003 + +0.1 1,519,243 - menB LU632_RS08115 0.33 -0.7 1,519,270 + menB LU632_RS08115 0.36 -0.4 1,519,271 - menB LU632_RS08115 0.36 -0.8 1,519,271 - menB LU632_RS08115 0.36 +0.5 1,519,271 - menB LU632_RS08115 0.36 -0.2 1,519,271 - menB LU632_RS08115 0.36 -0.3 1,519,271 - menB LU632_RS08115 0.36 +0.2 1,519,271 - menB LU632_RS08115 0.36 +0.7 1,519,394 + menB LU632_RS08115 0.50 -0.4 1,519,439 - menB LU632_RS08115 0.55 +0.9 1,519,470 + menB LU632_RS08115 0.59 -0.1 1,519,470 + menB LU632_RS08115 0.59 -0.2 1,519,470 + menB LU632_RS08115 0.59 +0.9 1,519,470 + menB LU632_RS08115 0.59 -0.1 1,519,471 - menB LU632_RS08115 0.59 +0.8 1,519,471 - menB LU632_RS08115 0.59 -0.5 1,519,471 - menB LU632_RS08115 0.59 -0.1 1,519,526 - menB LU632_RS08115 0.66 +0.2 1,519,530 + menB LU632_RS08115 0.66 +0.2 1,519,531 - menB LU632_RS08115 0.66 +0.0 1,519,531 - menB LU632_RS08115 0.66 +0.7 1,519,735 - -0.0 1,519,735 - -0.0 1,519,845 - -0.5
Or see this region's nucleotide sequence