Experiment: MelonXylem
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS08075 and LU632_RS08080 are separated by 29 nucleotides LU632_RS08080 and LU632_RS08085 are separated by 34 nucleotides LU632_RS08085 and tnpA are separated by 102 nucleotides tnpA and LU632_RS08095 are separated by 120 nucleotides LU632_RS08095 and elaB are separated by 190 nucleotides
LU632_RS08075: LU632_RS08075 - BNR repeat-containing protein, at 1,513,540 to 1,514,445
_RS08075
LU632_RS08080: LU632_RS08080 - LysR family transcriptional regulator, at 1,514,475 to 1,514,603
_RS08080
LU632_RS08085: LU632_RS08085 - glyoxalase, at 1,514,638 to 1,514,811
_RS08085
LU632_RS08090: tnpA - IS200/IS605 family transposase, at 1,514,914 to 1,515,339
tnpA
LU632_RS08095: LU632_RS08095 - glyoxalase, at 1,515,460 to 1,515,696
_RS08095
LU632_RS08100: elaB - stress response protein ElaB, at 1,515,887 to 1,516,198
elaB
Position (kb) 1514
1515
1516 Strain fitness (log2 ratio) -1
0
1
2
3 at 1513.963 kb on + strand, within LU632_RS08075 at 1513.963 kb on + strand, within LU632_RS08075 at 1514.160 kb on + strand, within LU632_RS08075 at 1514.160 kb on + strand, within LU632_RS08075 at 1514.161 kb on - strand, within LU632_RS08075 at 1514.161 kb on - strand, within LU632_RS08075 at 1514.161 kb on - strand, within LU632_RS08075 at 1514.169 kb on + strand, within LU632_RS08075 at 1514.224 kb on + strand, within LU632_RS08075 at 1514.259 kb on + strand, within LU632_RS08075 at 1514.407 kb on + strand at 1514.407 kb on + strand at 1514.435 kb on + strand at 1514.435 kb on + strand at 1514.437 kb on + strand at 1514.437 kb on + strand at 1514.496 kb on + strand, within LU632_RS08080 at 1514.496 kb on + strand, within LU632_RS08080 at 1514.496 kb on + strand, within LU632_RS08080 at 1514.499 kb on - strand, within LU632_RS08080 at 1514.499 kb on - strand, within LU632_RS08080 at 1514.711 kb on + strand, within LU632_RS08085 at 1514.712 kb on - strand, within LU632_RS08085 at 1514.712 kb on - strand, within LU632_RS08085 at 1515.482 kb on + strand at 1515.483 kb on - strand at 1515.483 kb on - strand at 1515.550 kb on + strand, within LU632_RS08095 at 1515.581 kb on - strand, within LU632_RS08095 at 1515.581 kb on - strand, within LU632_RS08095 at 1515.581 kb on - strand, within LU632_RS08095 at 1515.581 kb on - strand, within LU632_RS08095 at 1515.581 kb on - strand, within LU632_RS08095 at 1515.727 kb on - strand at 1515.728 kb on + strand at 1515.780 kb on + strand at 1515.803 kb on + strand at 1516.073 kb on + strand, within elaB at 1516.074 kb on - strand, within elaB at 1516.074 kb on - strand, within elaB at 1516.077 kb on - strand, within elaB at 1516.077 kb on - strand, within elaB at 1516.080 kb on - strand, within elaB at 1516.099 kb on + strand, within elaB at 1516.100 kb on - strand, within elaB at 1516.233 kb on + strand at 1516.243 kb on + strand at 1516.256 kb on + strand at 1516.257 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MelonXylem remove 1,513,963 + LU632_RS08075 0.47 +0.4 1,513,963 + LU632_RS08075 0.47 -0.5 1,514,160 + LU632_RS08075 0.68 -0.2 1,514,160 + LU632_RS08075 0.68 +0.3 1,514,161 - LU632_RS08075 0.69 -0.7 1,514,161 - LU632_RS08075 0.69 -0.1 1,514,161 - LU632_RS08075 0.69 +0.0 1,514,169 + LU632_RS08075 0.69 +1.3 1,514,224 + LU632_RS08075 0.75 +0.9 1,514,259 + LU632_RS08075 0.79 -0.1 1,514,407 + +0.5 1,514,407 + +0.6 1,514,435 + +0.5 1,514,435 + -0.1 1,514,437 + +0.2 1,514,437 + +0.1 1,514,496 + LU632_RS08080 0.16 +0.1 1,514,496 + LU632_RS08080 0.16 +3.7 1,514,496 + LU632_RS08080 0.16 +0.4 1,514,499 - LU632_RS08080 0.19 +0.3 1,514,499 - LU632_RS08080 0.19 -0.1 1,514,711 + LU632_RS08085 0.42 -0.4 1,514,712 - LU632_RS08085 0.43 +0.6 1,514,712 - LU632_RS08085 0.43 +0.1 1,515,482 + -0.0 1,515,483 - +0.9 1,515,483 - +0.3 1,515,550 + LU632_RS08095 0.38 -0.2 1,515,581 - LU632_RS08095 0.51 -0.6 1,515,581 - LU632_RS08095 0.51 -0.3 1,515,581 - LU632_RS08095 0.51 +0.1 1,515,581 - LU632_RS08095 0.51 -0.1 1,515,581 - LU632_RS08095 0.51 +0.4 1,515,727 - +0.1 1,515,728 + +0.1 1,515,780 + +0.2 1,515,803 + -0.3 1,516,073 + elaB LU632_RS08100 0.60 -0.2 1,516,074 - elaB LU632_RS08100 0.60 -1.1 1,516,074 - elaB LU632_RS08100 0.60 +0.8 1,516,077 - elaB LU632_RS08100 0.61 +0.6 1,516,077 - elaB LU632_RS08100 0.61 -1.0 1,516,080 - elaB LU632_RS08100 0.62 +0.5 1,516,099 + elaB LU632_RS08100 0.68 -0.0 1,516,100 - elaB LU632_RS08100 0.68 +0.3 1,516,233 + +0.5 1,516,243 + -0.2 1,516,256 + -1.2 1,516,257 - +0.1
Or see this region's nucleotide sequence