Experiment: MelonXylem
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS07880 and yfcF are separated by 226 nucleotides yfcF and yfcD are separated by 94 nucleotides yfcD and LU632_RS07895 are separated by 70 nucleotides
LU632_RS07880: LU632_RS07880 - TIGR01777 family oxidoreductase, at 1,472,086 to 1,472,979
_RS07880
LU632_RS07885: yfcF - glutathione transferase, at 1,473,206 to 1,473,853
yfcF
LU632_RS07890: yfcD - NUDIX hydrolase YfcD, at 1,473,948 to 1,474,490
yfcD
LU632_RS07895: LU632_RS07895 - IS1 family transposase, at 1,474,561 to 1,475,258
_RS07895
Position (kb) 1473
1474 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 1472.236 kb on + strand, within LU632_RS07880 at 1472.289 kb on + strand, within LU632_RS07880 at 1472.289 kb on + strand, within LU632_RS07880 at 1472.289 kb on + strand, within LU632_RS07880 at 1472.289 kb on + strand, within LU632_RS07880 at 1472.290 kb on - strand, within LU632_RS07880 at 1472.293 kb on + strand, within LU632_RS07880 at 1472.293 kb on + strand, within LU632_RS07880 at 1472.294 kb on - strand, within LU632_RS07880 at 1472.294 kb on - strand, within LU632_RS07880 at 1472.299 kb on - strand, within LU632_RS07880 at 1472.341 kb on - strand, within LU632_RS07880 at 1472.379 kb on + strand, within LU632_RS07880 at 1472.396 kb on + strand, within LU632_RS07880 at 1472.396 kb on + strand, within LU632_RS07880 at 1472.397 kb on - strand, within LU632_RS07880 at 1472.397 kb on - strand, within LU632_RS07880 at 1472.497 kb on + strand, within LU632_RS07880 at 1472.627 kb on + strand, within LU632_RS07880 at 1472.628 kb on - strand, within LU632_RS07880 at 1472.630 kb on + strand, within LU632_RS07880 at 1472.653 kb on - strand, within LU632_RS07880 at 1472.682 kb on + strand, within LU632_RS07880 at 1472.682 kb on + strand, within LU632_RS07880 at 1472.683 kb on - strand, within LU632_RS07880 at 1472.683 kb on - strand, within LU632_RS07880 at 1472.687 kb on - strand, within LU632_RS07880 at 1472.788 kb on - strand, within LU632_RS07880 at 1472.802 kb on + strand, within LU632_RS07880 at 1472.803 kb on - strand, within LU632_RS07880 at 1472.809 kb on + strand, within LU632_RS07880 at 1472.810 kb on - strand, within LU632_RS07880 at 1472.973 kb on + strand at 1472.974 kb on - strand at 1473.121 kb on + strand at 1473.122 kb on - strand at 1473.224 kb on - strand at 1473.224 kb on - strand at 1473.258 kb on - strand at 1473.363 kb on + strand, within yfcF at 1473.363 kb on + strand, within yfcF at 1473.363 kb on + strand, within yfcF at 1473.363 kb on + strand, within yfcF at 1473.363 kb on + strand, within yfcF at 1473.363 kb on + strand, within yfcF at 1473.364 kb on - strand, within yfcF at 1473.364 kb on - strand, within yfcF at 1473.364 kb on - strand, within yfcF at 1473.552 kb on + strand, within yfcF at 1473.679 kb on + strand, within yfcF at 1473.684 kb on + strand, within yfcF at 1473.759 kb on + strand, within yfcF at 1473.779 kb on + strand, within yfcF at 1473.852 kb on - strand at 1473.913 kb on - strand at 1473.971 kb on - strand at 1473.971 kb on - strand at 1473.998 kb on + strand at 1474.006 kb on + strand, within yfcD at 1474.009 kb on + strand, within yfcD at 1474.009 kb on + strand, within yfcD at 1474.065 kb on + strand, within yfcD at 1474.066 kb on - strand, within yfcD at 1474.066 kb on - strand, within yfcD at 1474.066 kb on - strand, within yfcD at 1474.066 kb on - strand, within yfcD at 1474.130 kb on + strand, within yfcD at 1474.488 kb on + strand at 1474.489 kb on - strand at 1474.501 kb on + strand at 1474.502 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MelonXylem remove 1,472,236 + LU632_RS07880 0.17 -0.1 1,472,289 + LU632_RS07880 0.23 -0.1 1,472,289 + LU632_RS07880 0.23 +1.5 1,472,289 + LU632_RS07880 0.23 -0.5 1,472,289 + LU632_RS07880 0.23 +0.0 1,472,290 - LU632_RS07880 0.23 +0.0 1,472,293 + LU632_RS07880 0.23 +0.9 1,472,293 + LU632_RS07880 0.23 -0.3 1,472,294 - LU632_RS07880 0.23 +0.4 1,472,294 - LU632_RS07880 0.23 -0.8 1,472,299 - LU632_RS07880 0.24 +0.3 1,472,341 - LU632_RS07880 0.29 -0.0 1,472,379 + LU632_RS07880 0.33 -0.6 1,472,396 + LU632_RS07880 0.35 -0.7 1,472,396 + LU632_RS07880 0.35 +0.2 1,472,397 - LU632_RS07880 0.35 -2.9 1,472,397 - LU632_RS07880 0.35 -0.3 1,472,497 + LU632_RS07880 0.46 -0.8 1,472,627 + LU632_RS07880 0.61 +0.9 1,472,628 - LU632_RS07880 0.61 -0.9 1,472,630 + LU632_RS07880 0.61 -0.4 1,472,653 - LU632_RS07880 0.63 -0.5 1,472,682 + LU632_RS07880 0.67 +0.2 1,472,682 + LU632_RS07880 0.67 +0.4 1,472,683 - LU632_RS07880 0.67 -0.4 1,472,683 - LU632_RS07880 0.67 -1.3 1,472,687 - LU632_RS07880 0.67 -1.2 1,472,788 - LU632_RS07880 0.79 +0.7 1,472,802 + LU632_RS07880 0.80 -0.3 1,472,803 - LU632_RS07880 0.80 -1.1 1,472,809 + LU632_RS07880 0.81 -0.4 1,472,810 - LU632_RS07880 0.81 -0.8 1,472,973 + -1.1 1,472,974 - -0.1 1,473,121 + -0.1 1,473,122 - +0.2 1,473,224 - -0.3 1,473,224 - +0.9 1,473,258 - -0.1 1,473,363 + yfcF LU632_RS07885 0.24 -0.2 1,473,363 + yfcF LU632_RS07885 0.24 -0.4 1,473,363 + yfcF LU632_RS07885 0.24 +0.4 1,473,363 + yfcF LU632_RS07885 0.24 -0.4 1,473,363 + yfcF LU632_RS07885 0.24 +0.9 1,473,363 + yfcF LU632_RS07885 0.24 -1.0 1,473,364 - yfcF LU632_RS07885 0.24 -1.2 1,473,364 - yfcF LU632_RS07885 0.24 -0.0 1,473,364 - yfcF LU632_RS07885 0.24 -2.1 1,473,552 + yfcF LU632_RS07885 0.53 -0.4 1,473,679 + yfcF LU632_RS07885 0.73 +0.9 1,473,684 + yfcF LU632_RS07885 0.74 +0.1 1,473,759 + yfcF LU632_RS07885 0.85 -1.4 1,473,779 + yfcF LU632_RS07885 0.88 +0.3 1,473,852 - +1.6 1,473,913 - +1.7 1,473,971 - -1.1 1,473,971 - -1.1 1,473,998 + -1.0 1,474,006 + yfcD LU632_RS07890 0.11 +0.9 1,474,009 + yfcD LU632_RS07890 0.11 -0.1 1,474,009 + yfcD LU632_RS07890 0.11 -0.1 1,474,065 + yfcD LU632_RS07890 0.22 +0.1 1,474,066 - yfcD LU632_RS07890 0.22 -0.5 1,474,066 - yfcD LU632_RS07890 0.22 +0.5 1,474,066 - yfcD LU632_RS07890 0.22 +2.2 1,474,066 - yfcD LU632_RS07890 0.22 +0.5 1,474,130 + yfcD LU632_RS07890 0.34 -1.3 1,474,488 + -0.7 1,474,489 - +0.5 1,474,501 + -0.2 1,474,502 - +0.3
Or see this region's nucleotide sequence