Experiment: MelonXylem
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS07220 and LU632_RS07225 are separated by 129 nucleotides LU632_RS07225 and LU632_RS07230 overlap by 4 nucleotides LU632_RS07230 and LU632_RS07235 are separated by 329 nucleotides
LU632_RS07220: LU632_RS07220 - hypothetical protein, at 1,367,264 to 1,367,491
_RS07220
LU632_RS07225: LU632_RS07225 - DUF3289 family protein, at 1,367,621 to 1,368,456
_RS07225
LU632_RS07230: LU632_RS07230 - DUF943 family protein, at 1,368,453 to 1,368,923
_RS07230
LU632_RS07235: LU632_RS07235 - helix-turn-helix domain-containing protein, at 1,369,253 to 1,370,292
_RS07235
Position (kb) 1368
1369 Strain fitness (log2 ratio) -2
-1
0
1
2 at 1367.456 kb on + strand, within LU632_RS07220 at 1367.457 kb on - strand, within LU632_RS07220 at 1367.481 kb on - strand at 1367.493 kb on + strand at 1367.538 kb on + strand at 1367.539 kb on - strand at 1367.547 kb on + strand at 1367.548 kb on - strand at 1367.570 kb on - strand at 1367.572 kb on + strand at 1367.601 kb on + strand at 1367.602 kb on - strand at 1367.602 kb on - strand at 1367.631 kb on + strand at 1367.632 kb on - strand at 1367.645 kb on - strand at 1367.649 kb on + strand at 1367.653 kb on + strand at 1367.654 kb on - strand at 1367.654 kb on - strand at 1367.924 kb on + strand, within LU632_RS07225 at 1367.951 kb on - strand, within LU632_RS07225 at 1367.992 kb on - strand, within LU632_RS07225 at 1367.992 kb on - strand, within LU632_RS07225 at 1368.019 kb on + strand, within LU632_RS07225 at 1368.020 kb on - strand, within LU632_RS07225 at 1368.020 kb on - strand, within LU632_RS07225 at 1368.035 kb on - strand, within LU632_RS07225 at 1368.071 kb on + strand, within LU632_RS07225 at 1368.231 kb on + strand, within LU632_RS07225 at 1368.238 kb on - strand, within LU632_RS07225 at 1368.467 kb on + strand at 1368.611 kb on + strand, within LU632_RS07230 at 1368.612 kb on - strand, within LU632_RS07230 at 1368.612 kb on - strand, within LU632_RS07230 at 1368.669 kb on + strand, within LU632_RS07230 at 1368.670 kb on - strand, within LU632_RS07230 at 1368.670 kb on - strand, within LU632_RS07230 at 1368.753 kb on + strand, within LU632_RS07230 at 1368.859 kb on + strand, within LU632_RS07230 at 1368.859 kb on + strand, within LU632_RS07230 at 1368.859 kb on + strand, within LU632_RS07230 at 1368.860 kb on - strand, within LU632_RS07230 at 1368.860 kb on - strand, within LU632_RS07230 at 1368.860 kb on - strand, within LU632_RS07230 at 1368.861 kb on + strand, within LU632_RS07230 at 1368.862 kb on - strand, within LU632_RS07230 at 1368.902 kb on + strand at 1368.941 kb on - strand at 1368.941 kb on - strand at 1368.971 kb on + strand at 1368.972 kb on - strand at 1369.154 kb on - strand at 1369.154 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MelonXylem remove 1,367,456 + LU632_RS07220 0.84 -0.2 1,367,457 - LU632_RS07220 0.85 -0.5 1,367,481 - +0.5 1,367,493 + +0.1 1,367,538 + +0.2 1,367,539 - +0.2 1,367,547 + +0.9 1,367,548 - -0.4 1,367,570 - -0.5 1,367,572 + -0.0 1,367,601 + +0.4 1,367,602 - +0.1 1,367,602 - +0.2 1,367,631 + -0.6 1,367,632 - +0.2 1,367,645 - -0.6 1,367,649 + -0.1 1,367,653 + +0.0 1,367,654 - +0.1 1,367,654 - +0.6 1,367,924 + LU632_RS07225 0.36 -0.1 1,367,951 - LU632_RS07225 0.39 +0.9 1,367,992 - LU632_RS07225 0.44 -0.1 1,367,992 - LU632_RS07225 0.44 +0.1 1,368,019 + LU632_RS07225 0.48 +2.5 1,368,020 - LU632_RS07225 0.48 +0.5 1,368,020 - LU632_RS07225 0.48 -0.2 1,368,035 - LU632_RS07225 0.50 +0.0 1,368,071 + LU632_RS07225 0.54 +0.4 1,368,231 + LU632_RS07225 0.73 +1.1 1,368,238 - LU632_RS07225 0.74 -0.4 1,368,467 + +0.2 1,368,611 + LU632_RS07230 0.34 -0.4 1,368,612 - LU632_RS07230 0.34 +0.9 1,368,612 - LU632_RS07230 0.34 +0.9 1,368,669 + LU632_RS07230 0.46 -0.5 1,368,670 - LU632_RS07230 0.46 +0.5 1,368,670 - LU632_RS07230 0.46 -0.3 1,368,753 + LU632_RS07230 0.64 -0.1 1,368,859 + LU632_RS07230 0.86 +0.5 1,368,859 + LU632_RS07230 0.86 -2.5 1,368,859 + LU632_RS07230 0.86 -0.3 1,368,860 - LU632_RS07230 0.86 +0.4 1,368,860 - LU632_RS07230 0.86 -0.3 1,368,860 - LU632_RS07230 0.86 +0.4 1,368,861 + LU632_RS07230 0.87 +0.2 1,368,862 - LU632_RS07230 0.87 +0.2 1,368,902 + +1.4 1,368,941 - +0.3 1,368,941 - -0.2 1,368,971 + -0.9 1,368,972 - +1.5 1,369,154 - -0.1 1,369,154 - +1.4
Or see this region's nucleotide sequence