Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS06945

Experiment: MelonXylem

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLU632_RS06935 and LU632_RS06940 overlap by 4 nucleotidesLU632_RS06940 and LU632_RS06945 overlap by 4 nucleotidesLU632_RS06945 and LU632_RS06950 overlap by 8 nucleotidesLU632_RS06950 and LU632_RS06955 overlap by 4 nucleotides LU632_RS06935: LU632_RS06935 - hypothetical protein, at 1,327,060 to 1,327,782 _RS06935 LU632_RS06940: LU632_RS06940 - class I SAM-dependent methyltransferase, at 1,327,779 to 1,328,258 _RS06940 LU632_RS06945: LU632_RS06945 - hypothetical protein, at 1,328,255 to 1,328,479 _RS06945 LU632_RS06950: LU632_RS06950 - hypothetical protein, at 1,328,472 to 1,329,047 _RS06950 LU632_RS06955: LU632_RS06955 - hypothetical protein, at 1,329,044 to 1,329,625 _RS06955 Position (kb) 1328 1329Strain fitness (log2 ratio) -2 -1 0 1 2at 1327.259 kb on + strand, within LU632_RS06935at 1327.276 kb on - strand, within LU632_RS06935at 1327.276 kb on - strand, within LU632_RS06935at 1327.277 kb on + strand, within LU632_RS06935at 1327.277 kb on + strand, within LU632_RS06935at 1327.277 kb on + strand, within LU632_RS06935at 1327.277 kb on + strand, within LU632_RS06935at 1327.278 kb on - strand, within LU632_RS06935at 1327.278 kb on - strand, within LU632_RS06935at 1327.371 kb on - strand, within LU632_RS06935at 1327.371 kb on - strand, within LU632_RS06935at 1327.414 kb on - strand, within LU632_RS06935at 1327.449 kb on + strand, within LU632_RS06935at 1327.452 kb on - strand, within LU632_RS06935at 1327.515 kb on + strand, within LU632_RS06935at 1327.515 kb on + strand, within LU632_RS06935at 1327.516 kb on - strand, within LU632_RS06935at 1327.518 kb on - strand, within LU632_RS06935at 1327.518 kb on - strand, within LU632_RS06935at 1327.518 kb on - strand, within LU632_RS06935at 1327.680 kb on - strand, within LU632_RS06935at 1327.705 kb on + strand, within LU632_RS06935at 1327.705 kb on + strand, within LU632_RS06935at 1327.706 kb on - strand, within LU632_RS06935at 1327.741 kb on - strandat 1327.773 kb on + strandat 1327.773 kb on + strandat 1327.872 kb on + strand, within LU632_RS06940at 1327.872 kb on + strand, within LU632_RS06940at 1327.872 kb on + strand, within LU632_RS06940at 1327.872 kb on + strand, within LU632_RS06940at 1327.888 kb on - strand, within LU632_RS06940at 1327.907 kb on + strand, within LU632_RS06940at 1327.908 kb on - strand, within LU632_RS06940at 1328.153 kb on + strand, within LU632_RS06940at 1328.153 kb on + strand, within LU632_RS06940at 1328.153 kb on + strand, within LU632_RS06940at 1328.154 kb on - strand, within LU632_RS06940at 1328.178 kb on - strand, within LU632_RS06940at 1328.298 kb on + strand, within LU632_RS06945at 1328.357 kb on + strand, within LU632_RS06945at 1328.418 kb on - strand, within LU632_RS06945at 1328.759 kb on - strand, within LU632_RS06950at 1328.885 kb on - strand, within LU632_RS06950at 1328.911 kb on - strand, within LU632_RS06950at 1328.960 kb on + strand, within LU632_RS06950at 1329.109 kb on + strand, within LU632_RS06955at 1329.233 kb on + strand, within LU632_RS06955at 1329.343 kb on - strand, within LU632_RS06955

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Per-strain Table

Position Strand Gene LocusTag Fraction MelonXylem
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1,327,259 + LU632_RS06935 0.28 +0.2
1,327,276 - LU632_RS06935 0.30 +0.3
1,327,276 - LU632_RS06935 0.30 -0.5
1,327,277 + LU632_RS06935 0.30 +0.1
1,327,277 + LU632_RS06935 0.30 +0.1
1,327,277 + LU632_RS06935 0.30 +0.1
1,327,277 + LU632_RS06935 0.30 +0.6
1,327,278 - LU632_RS06935 0.30 +0.1
1,327,278 - LU632_RS06935 0.30 -0.1
1,327,371 - LU632_RS06935 0.43 +0.5
1,327,371 - LU632_RS06935 0.43 +0.3
1,327,414 - LU632_RS06935 0.49 -0.3
1,327,449 + LU632_RS06935 0.54 -0.3
1,327,452 - LU632_RS06935 0.54 +0.1
1,327,515 + LU632_RS06935 0.63 +1.8
1,327,515 + LU632_RS06935 0.63 -0.4
1,327,516 - LU632_RS06935 0.63 -0.8
1,327,518 - LU632_RS06935 0.63 +0.9
1,327,518 - LU632_RS06935 0.63 +0.5
1,327,518 - LU632_RS06935 0.63 +0.5
1,327,680 - LU632_RS06935 0.86 +0.1
1,327,705 + LU632_RS06935 0.89 -0.7
1,327,705 + LU632_RS06935 0.89 -0.1
1,327,706 - LU632_RS06935 0.89 +0.4
1,327,741 - -1.3
1,327,773 + +0.0
1,327,773 + -0.2
1,327,872 + LU632_RS06940 0.19 -0.3
1,327,872 + LU632_RS06940 0.19 -0.4
1,327,872 + LU632_RS06940 0.19 -0.3
1,327,872 + LU632_RS06940 0.19 +0.7
1,327,888 - LU632_RS06940 0.23 -0.1
1,327,907 + LU632_RS06940 0.27 +0.6
1,327,908 - LU632_RS06940 0.27 -0.1
1,328,153 + LU632_RS06940 0.78 +0.9
1,328,153 + LU632_RS06940 0.78 +0.8
1,328,153 + LU632_RS06940 0.78 -0.6
1,328,154 - LU632_RS06940 0.78 -0.1
1,328,178 - LU632_RS06940 0.83 -0.6
1,328,298 + LU632_RS06945 0.19 +0.1
1,328,357 + LU632_RS06945 0.45 +0.8
1,328,418 - LU632_RS06945 0.72 +0.2
1,328,759 - LU632_RS06950 0.50 -1.2
1,328,885 - LU632_RS06950 0.72 -1.1
1,328,911 - LU632_RS06950 0.76 +0.2
1,328,960 + LU632_RS06950 0.85 -0.3
1,329,109 + LU632_RS06955 0.11 +0.4
1,329,233 + LU632_RS06955 0.32 +0.4
1,329,343 - LU632_RS06955 0.51 -1.9

Or see this region's nucleotide sequence