Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS06240

Experiment: MelonXylem

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	MelonXylem
1,194,198	-	tcdA	LU632_RS06230	0.39	-1.6
1,194,234	-	tcdA	LU632_RS06230	0.43	+0.1
1,194,234	-	tcdA	LU632_RS06230	0.43	-1.9
1,194,254	-	tcdA	LU632_RS06230	0.46	+1.7
1,194,319	-	tcdA	LU632_RS06230	0.54	-1.1
1,194,319	-	tcdA	LU632_RS06230	0.54	+0.6
1,194,333	+	tcdA	LU632_RS06230	0.56	+0.0
1,194,420	+	tcdA	LU632_RS06230	0.67	-0.2
1,194,425	+	tcdA	LU632_RS06230	0.67	-0.0
1,194,485	+	tcdA	LU632_RS06230	0.75	-0.0
1,194,485	+	tcdA	LU632_RS06230	0.75	+0.0
1,194,485	+	tcdA	LU632_RS06230	0.75	+0.8
1,194,517	+	tcdA	LU632_RS06230	0.79	+0.1
1,194,518	-	tcdA	LU632_RS06230	0.79	-0.1
1,194,654	-				-0.0
1,194,791	-	csdE	LU632_RS06235	0.23	+0.1
1,194,796	+	csdE	LU632_RS06235	0.24	+1.0
1,194,872	-	csdE	LU632_RS06235	0.41	+0.5
1,194,896	+	csdE	LU632_RS06235	0.47	-0.1
1,194,897	-	csdE	LU632_RS06235	0.47	-0.8
1,194,897	-	csdE	LU632_RS06235	0.47	+0.4
1,195,019	-	csdE	LU632_RS06235	0.75	-0.8
1,195,199	+				-2.2
1,195,202	+				-1.6
1,195,203	-				-0.8
1,195,203	-				+0.9
1,195,203	-				+0.6
1,195,205	-				+1.1
1,195,230	-				+1.0
1,195,253	+				-0.7
1,195,254	-				+1.0
1,195,317	+	csdA	LU632_RS06240	0.15	+0.5
1,195,318	-	csdA	LU632_RS06240	0.15	-1.1
1,195,318	-	csdA	LU632_RS06240	0.15	+1.1
1,195,503	+	csdA	LU632_RS06240	0.31	+0.3
1,195,503	+	csdA	LU632_RS06240	0.31	+0.8
1,195,585	-	csdA	LU632_RS06240	0.37	-0.0
1,195,585	-	csdA	LU632_RS06240	0.37	-2.0
1,195,694	+	csdA	LU632_RS06240	0.46	+0.1
1,195,734	+	csdA	LU632_RS06240	0.50	+0.3
1,195,734	+	csdA	LU632_RS06240	0.50	+0.9
1,195,735	-	csdA	LU632_RS06240	0.50	-1.3
1,195,735	-	csdA	LU632_RS06240	0.50	+0.2
1,195,929	-	csdA	LU632_RS06240	0.66	+0.7
1,196,177	-	csdA	LU632_RS06240	0.86	+2.0
1,196,226	-				+0.8
1,196,226	-				+1.1
1,196,275	+				-0.7
1,196,275	+				-0.0
1,196,276	-				+1.4
1,196,276	-				+1.4
1,196,276	-				-0.0
1,196,327	+				+0.8
1,196,327	+				+0.2
1,196,339	+				-0.6
1,196,340	-				+0.5
1,196,395	+				+0.2
1,196,442	-				+0.4
1,196,442	-				-0.3
1,196,470	+				-0.1
1,196,483	-				+0.5
1,196,528	+				+0.5
1,196,571	-		LU632_RS06245	0.11	-0.1
1,196,571	-		LU632_RS06245	0.11	+0.1
1,196,589	-		LU632_RS06245	0.20	+0.5
1,196,592	+		LU632_RS06245	0.21	+1.4
1,196,592	+		LU632_RS06245	0.21	-0.5
1,196,592	+		LU632_RS06245	0.21	+0.5
1,196,592	+		LU632_RS06245	0.21	-0.7
1,196,637	-		LU632_RS06245	0.44	+1.0
1,196,658	-		LU632_RS06245	0.55	+1.0
1,196,746	-				-0.1