Experiment: MelonXylem
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS05195 and LU632_RS05200 are separated by 68 nucleotides LU632_RS05200 and LU632_RS05205 are separated by 6 nucleotides LU632_RS05205 and LU632_RS05210 are separated by 192 nucleotides LU632_RS05210 and LU632_RS05215 overlap by 1 nucleotides
LU632_RS05195: LU632_RS05195 - hypothetical protein, at 1,006,560 to 1,006,877
_RS05195
LU632_RS05200: LU632_RS05200 - toll/interleukin-1 receptor domain-containing protein, at 1,006,946 to 1,007,578
_RS05200
LU632_RS05205: LU632_RS05205 - hypothetical protein, at 1,007,585 to 1,007,893
_RS05205
LU632_RS05210: LU632_RS05210 - TIGR03757 family integrating conjugative element protein, at 1,008,086 to 1,008,484
_RS05210
LU632_RS05215: LU632_RS05215 - TIGR03756 family integrating conjugative element protein, at 1,008,484 to 1,009,462
_RS05215
Position (kb) 1007
1008 Strain fitness (log2 ratio) -1
0
1
2 at 1006.598 kb on + strand, within LU632_RS05195 at 1006.667 kb on + strand, within LU632_RS05195 at 1006.667 kb on + strand, within LU632_RS05195 at 1006.667 kb on + strand, within LU632_RS05195 at 1006.668 kb on - strand, within LU632_RS05195 at 1006.668 kb on - strand, within LU632_RS05195 at 1006.673 kb on + strand, within LU632_RS05195 at 1006.697 kb on - strand, within LU632_RS05195 at 1006.763 kb on + strand, within LU632_RS05195 at 1006.764 kb on - strand, within LU632_RS05195 at 1006.822 kb on - strand, within LU632_RS05195 at 1006.928 kb on - strand at 1007.061 kb on + strand, within LU632_RS05200 at 1007.092 kb on + strand, within LU632_RS05200 at 1007.152 kb on + strand, within LU632_RS05200 at 1007.169 kb on - strand, within LU632_RS05200 at 1007.171 kb on - strand, within LU632_RS05200 at 1007.172 kb on + strand, within LU632_RS05200 at 1007.217 kb on + strand, within LU632_RS05200 at 1007.284 kb on + strand, within LU632_RS05200 at 1007.328 kb on + strand, within LU632_RS05200 at 1007.338 kb on - strand, within LU632_RS05200 at 1007.370 kb on + strand, within LU632_RS05200 at 1007.405 kb on - strand, within LU632_RS05200 at 1007.408 kb on + strand, within LU632_RS05200 at 1007.409 kb on - strand, within LU632_RS05200 at 1007.478 kb on + strand, within LU632_RS05200 at 1007.478 kb on + strand, within LU632_RS05200 at 1007.483 kb on - strand, within LU632_RS05200 at 1007.484 kb on + strand, within LU632_RS05200 at 1007.492 kb on + strand, within LU632_RS05200 at 1007.583 kb on - strand at 1007.642 kb on + strand, within LU632_RS05205 at 1007.643 kb on - strand, within LU632_RS05205 at 1007.643 kb on - strand, within LU632_RS05205 at 1007.687 kb on + strand, within LU632_RS05205 at 1007.830 kb on - strand, within LU632_RS05205 at 1007.895 kb on - strand at 1007.965 kb on + strand at 1007.965 kb on + strand at 1007.965 kb on + strand at 1008.348 kb on - strand, within LU632_RS05210 at 1008.425 kb on + strand, within LU632_RS05210 at 1008.539 kb on + strand at 1008.540 kb on - strand at 1008.543 kb on - strand at 1008.543 kb on - strand at 1008.546 kb on + strand at 1008.546 kb on + strand at 1008.594 kb on + strand, within LU632_RS05215 at 1008.736 kb on + strand, within LU632_RS05215 at 1008.737 kb on - strand, within LU632_RS05215 at 1008.737 kb on - strand, within LU632_RS05215
Per-strain Table
Position Strand Gene LocusTag Fraction MelonXylem remove 1,006,598 + LU632_RS05195 0.12 -0.6 1,006,667 + LU632_RS05195 0.34 -0.5 1,006,667 + LU632_RS05195 0.34 +2.4 1,006,667 + LU632_RS05195 0.34 -0.5 1,006,668 - LU632_RS05195 0.34 +1.0 1,006,668 - LU632_RS05195 0.34 -0.6 1,006,673 + LU632_RS05195 0.36 +1.1 1,006,697 - LU632_RS05195 0.43 +0.1 1,006,763 + LU632_RS05195 0.64 +0.2 1,006,764 - LU632_RS05195 0.64 -0.3 1,006,822 - LU632_RS05195 0.82 +0.4 1,006,928 - -0.0 1,007,061 + LU632_RS05200 0.18 -0.2 1,007,092 + LU632_RS05200 0.23 -0.3 1,007,152 + LU632_RS05200 0.33 -0.1 1,007,169 - LU632_RS05200 0.35 -1.5 1,007,171 - LU632_RS05200 0.36 +0.0 1,007,172 + LU632_RS05200 0.36 -0.4 1,007,217 + LU632_RS05200 0.43 -0.8 1,007,284 + LU632_RS05200 0.53 -0.5 1,007,328 + LU632_RS05200 0.60 -0.0 1,007,338 - LU632_RS05200 0.62 -0.4 1,007,370 + LU632_RS05200 0.67 -0.4 1,007,405 - LU632_RS05200 0.73 -0.5 1,007,408 + LU632_RS05200 0.73 +0.4 1,007,409 - LU632_RS05200 0.73 +0.8 1,007,478 + LU632_RS05200 0.84 +0.6 1,007,478 + LU632_RS05200 0.84 +0.2 1,007,483 - LU632_RS05200 0.85 +1.2 1,007,484 + LU632_RS05200 0.85 -0.0 1,007,492 + LU632_RS05200 0.86 -0.3 1,007,583 - -0.1 1,007,642 + LU632_RS05205 0.18 -0.3 1,007,643 - LU632_RS05205 0.19 +1.0 1,007,643 - LU632_RS05205 0.19 +0.3 1,007,687 + LU632_RS05205 0.33 +1.0 1,007,830 - LU632_RS05205 0.79 +0.0 1,007,895 - -0.5 1,007,965 + -1.6 1,007,965 + +1.0 1,007,965 + +0.6 1,008,348 - LU632_RS05210 0.66 -0.3 1,008,425 + LU632_RS05210 0.85 -1.4 1,008,539 + -0.6 1,008,540 - -0.4 1,008,543 - +0.5 1,008,543 - +2.0 1,008,546 + -0.0 1,008,546 + +1.0 1,008,594 + LU632_RS05215 0.11 +0.2 1,008,736 + LU632_RS05215 0.26 -0.3 1,008,737 - LU632_RS05215 0.26 +0.0 1,008,737 - LU632_RS05215 0.26 +0.6
Or see this region's nucleotide sequence