Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS04730

Experiment: MelonXylem

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLU632_RS04725 and LU632_RS04730 are separated by 126 nucleotidesLU632_RS04730 and LU632_RS04735 are separated by 132 nucleotides LU632_RS04725: LU632_RS04725 - transporter substrate-binding domain-containing protein, at 926,307 to 929,459 _RS04725 LU632_RS04730: LU632_RS04730 - DUF1090 domain-containing protein, at 929,586 to 930,020 _RS04730 LU632_RS04735: LU632_RS04735 - fimbria/pilus outer membrane usher protein, at 930,153 to 932,198 _RS04735 Position (kb) 929 930 931Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 928.603 kb on - strand, within LU632_RS04725at 928.603 kb on - strand, within LU632_RS04725at 928.603 kb on - strand, within LU632_RS04725at 928.604 kb on + strand, within LU632_RS04725at 928.723 kb on + strand, within LU632_RS04725at 928.723 kb on + strand, within LU632_RS04725at 928.724 kb on - strand, within LU632_RS04725at 928.731 kb on - strand, within LU632_RS04725at 928.732 kb on + strand, within LU632_RS04725at 928.732 kb on + strand, within LU632_RS04725at 928.732 kb on + strand, within LU632_RS04725at 928.733 kb on - strand, within LU632_RS04725at 928.733 kb on - strand, within LU632_RS04725at 928.807 kb on + strand, within LU632_RS04725at 928.807 kb on + strand, within LU632_RS04725at 928.808 kb on - strand, within LU632_RS04725at 928.923 kb on - strand, within LU632_RS04725at 928.957 kb on + strand, within LU632_RS04725at 928.958 kb on - strand, within LU632_RS04725at 928.958 kb on - strand, within LU632_RS04725at 928.972 kb on - strand, within LU632_RS04725at 929.082 kb on - strand, within LU632_RS04725at 929.082 kb on - strand, within LU632_RS04725at 929.395 kb on + strandat 929.413 kb on + strandat 929.469 kb on + strandat 929.470 kb on - strandat 929.470 kb on - strandat 929.518 kb on + strandat 929.563 kb on + strandat 929.563 kb on + strandat 929.563 kb on + strandat 929.563 kb on + strandat 929.631 kb on - strand, within LU632_RS04730at 929.631 kb on - strand, within LU632_RS04730at 929.727 kb on - strand, within LU632_RS04730at 929.780 kb on + strand, within LU632_RS04730at 929.780 kb on + strand, within LU632_RS04730at 929.781 kb on - strand, within LU632_RS04730at 929.781 kb on - strand, within LU632_RS04730at 929.783 kb on + strand, within LU632_RS04730at 929.892 kb on - strand, within LU632_RS04730at 929.904 kb on - strand, within LU632_RS04730at 930.014 kb on + strandat 930.014 kb on + strandat 930.019 kb on - strandat 930.173 kb on + strandat 930.173 kb on + strandat 930.449 kb on + strand, within LU632_RS04735at 930.471 kb on - strand, within LU632_RS04735at 930.539 kb on + strand, within LU632_RS04735at 930.573 kb on - strand, within LU632_RS04735at 930.573 kb on - strand, within LU632_RS04735at 930.679 kb on - strand, within LU632_RS04735at 930.680 kb on + strand, within LU632_RS04735at 930.680 kb on + strand, within LU632_RS04735at 930.680 kb on + strand, within LU632_RS04735at 930.681 kb on - strand, within LU632_RS04735at 930.681 kb on - strand, within LU632_RS04735at 930.704 kb on + strand, within LU632_RS04735at 930.704 kb on + strand, within LU632_RS04735at 930.704 kb on + strand, within LU632_RS04735at 930.704 kb on + strand, within LU632_RS04735at 930.705 kb on - strand, within LU632_RS04735at 930.705 kb on - strand, within LU632_RS04735at 930.812 kb on + strand, within LU632_RS04735at 930.992 kb on + strand, within LU632_RS04735at 930.992 kb on + strand, within LU632_RS04735

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Per-strain Table

Position Strand Gene LocusTag Fraction MelonXylem
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928,603 - LU632_RS04725 0.73 -2.8
928,603 - LU632_RS04725 0.73 +1.0
928,603 - LU632_RS04725 0.73 +0.4
928,604 + LU632_RS04725 0.73 +1.0
928,723 + LU632_RS04725 0.77 -0.5
928,723 + LU632_RS04725 0.77 -0.4
928,724 - LU632_RS04725 0.77 -0.6
928,731 - LU632_RS04725 0.77 -0.2
928,732 + LU632_RS04725 0.77 -0.8
928,732 + LU632_RS04725 0.77 +0.2
928,732 + LU632_RS04725 0.77 +0.4
928,733 - LU632_RS04725 0.77 +0.1
928,733 - LU632_RS04725 0.77 +0.4
928,807 + LU632_RS04725 0.79 +0.5
928,807 + LU632_RS04725 0.79 -0.2
928,808 - LU632_RS04725 0.79 -0.4
928,923 - LU632_RS04725 0.83 +1.0
928,957 + LU632_RS04725 0.84 +0.2
928,958 - LU632_RS04725 0.84 +1.0
928,958 - LU632_RS04725 0.84 -0.0
928,972 - LU632_RS04725 0.85 -0.0
929,082 - LU632_RS04725 0.88 -0.4
929,082 - LU632_RS04725 0.88 -0.4
929,395 + -0.5
929,413 + -0.8
929,469 + +0.6
929,470 - +0.4
929,470 - +0.1
929,518 + -1.0
929,563 + -0.5
929,563 + +0.4
929,563 + +1.0
929,563 + -0.3
929,631 - LU632_RS04730 0.10 -0.3
929,631 - LU632_RS04730 0.10 +2.1
929,727 - LU632_RS04730 0.32 +0.3
929,780 + LU632_RS04730 0.45 +0.5
929,780 + LU632_RS04730 0.45 -0.7
929,781 - LU632_RS04730 0.45 +0.1
929,781 - LU632_RS04730 0.45 +0.4
929,783 + LU632_RS04730 0.45 -0.8
929,892 - LU632_RS04730 0.70 +0.1
929,904 - LU632_RS04730 0.73 -0.1
930,014 + +0.4
930,014 + -0.9
930,019 - +0.5
930,173 + -0.3
930,173 + -1.3
930,449 + LU632_RS04735 0.14 -0.1
930,471 - LU632_RS04735 0.16 +0.3
930,539 + LU632_RS04735 0.19 +0.2
930,573 - LU632_RS04735 0.21 +1.6
930,573 - LU632_RS04735 0.21 -0.8
930,679 - LU632_RS04735 0.26 -0.3
930,680 + LU632_RS04735 0.26 +0.1
930,680 + LU632_RS04735 0.26 -0.7
930,680 + LU632_RS04735 0.26 -0.3
930,681 - LU632_RS04735 0.26 +0.2
930,681 - LU632_RS04735 0.26 +0.4
930,704 + LU632_RS04735 0.27 +1.1
930,704 + LU632_RS04735 0.27 -0.3
930,704 + LU632_RS04735 0.27 -1.7
930,704 + LU632_RS04735 0.27 -0.2
930,705 - LU632_RS04735 0.27 +1.0
930,705 - LU632_RS04735 0.27 +1.4
930,812 + LU632_RS04735 0.32 +0.5
930,992 + LU632_RS04735 0.41 -0.0
930,992 + LU632_RS04735 0.41 +0.1

Or see this region's nucleotide sequence