Experiment: MelonXylem
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS04160 and LU632_RS04165 are separated by 345 nucleotides LU632_RS04165 and LU632_RS04170 are separated by 498 nucleotides
LU632_RS04160: LU632_RS04160 - KdgM family transporter, at 825,772 to 826,515
_RS04160
LU632_RS04165: LU632_RS04165 - 2-isopropylmalate synthase, at 826,861 to 827,376
_RS04165
LU632_RS04170: LU632_RS04170 - ankyrin repeat domain-containing protein, at 827,875 to 828,414
_RS04170
Position (kb) 826
827
828 Strain fitness (log2 ratio) -1
0
1
2 at 825.969 kb on + strand, within LU632_RS04160 at 826.011 kb on + strand, within LU632_RS04160 at 826.012 kb on - strand, within LU632_RS04160 at 826.023 kb on - strand, within LU632_RS04160 at 826.105 kb on - strand, within LU632_RS04160 at 826.147 kb on + strand, within LU632_RS04160 at 826.158 kb on + strand, within LU632_RS04160 at 826.365 kb on + strand, within LU632_RS04160 at 826.366 kb on - strand, within LU632_RS04160 at 826.370 kb on - strand, within LU632_RS04160 at 826.383 kb on - strand, within LU632_RS04160 at 826.427 kb on - strand, within LU632_RS04160 at 826.443 kb on + strand at 826.446 kb on + strand at 826.618 kb on + strand at 826.719 kb on - strand at 826.754 kb on + strand at 826.754 kb on + strand at 826.801 kb on + strand at 826.852 kb on + strand at 826.888 kb on - strand at 826.888 kb on - strand at 826.999 kb on - strand, within LU632_RS04165 at 827.054 kb on + strand, within LU632_RS04165 at 827.058 kb on + strand, within LU632_RS04165 at 827.097 kb on + strand, within LU632_RS04165 at 827.236 kb on + strand, within LU632_RS04165 at 827.236 kb on + strand, within LU632_RS04165 at 827.256 kb on + strand, within LU632_RS04165 at 827.256 kb on + strand, within LU632_RS04165 at 827.257 kb on - strand, within LU632_RS04165 at 827.335 kb on - strand at 827.336 kb on + strand at 827.338 kb on + strand at 827.338 kb on + strand at 827.338 kb on + strand at 827.338 kb on + strand at 827.339 kb on - strand at 827.404 kb on + strand at 827.426 kb on + strand at 827.426 kb on + strand at 827.431 kb on + strand at 827.432 kb on - strand at 827.466 kb on + strand at 827.503 kb on - strand at 827.541 kb on + strand at 827.556 kb on + strand at 827.557 kb on - strand at 827.557 kb on - strand at 827.557 kb on - strand at 827.558 kb on + strand at 827.559 kb on - strand at 827.574 kb on + strand at 827.575 kb on - strand at 827.610 kb on - strand at 827.610 kb on - strand at 827.637 kb on + strand at 827.638 kb on - strand at 827.698 kb on + strand at 827.699 kb on - strand at 827.709 kb on - strand at 827.709 kb on - strand at 827.826 kb on + strand at 827.827 kb on - strand at 827.827 kb on - strand at 827.829 kb on + strand at 827.829 kb on + strand at 827.829 kb on + strand at 827.830 kb on - strand at 827.830 kb on - strand at 827.834 kb on - strand at 827.834 kb on - strand at 827.845 kb on + strand at 827.847 kb on + strand at 827.847 kb on + strand at 827.847 kb on + strand at 827.847 kb on + strand at 827.848 kb on - strand at 827.916 kb on + strand at 827.916 kb on + strand at 827.916 kb on + strand at 827.917 kb on - strand at 827.917 kb on - strand at 827.920 kb on - strand at 827.920 kb on - strand at 828.002 kb on + strand, within LU632_RS04170 at 828.002 kb on + strand, within LU632_RS04170 at 828.002 kb on + strand, within LU632_RS04170 at 828.003 kb on - strand, within LU632_RS04170 at 828.245 kb on + strand, within LU632_RS04170 at 828.245 kb on + strand, within LU632_RS04170 at 828.245 kb on + strand, within LU632_RS04170 at 828.246 kb on - strand, within LU632_RS04170 at 828.309 kb on - strand, within LU632_RS04170 at 828.309 kb on - strand, within LU632_RS04170 at 828.312 kb on + strand, within LU632_RS04170 at 828.313 kb on - strand, within LU632_RS04170
Per-strain Table
Position Strand Gene LocusTag Fraction MelonXylem remove 825,969 + LU632_RS04160 0.26 -0.2 826,011 + LU632_RS04160 0.32 -0.2 826,012 - LU632_RS04160 0.32 +0.5 826,023 - LU632_RS04160 0.34 +0.5 826,105 - LU632_RS04160 0.45 -0.6 826,147 + LU632_RS04160 0.50 +0.6 826,158 + LU632_RS04160 0.52 +0.4 826,365 + LU632_RS04160 0.80 -0.5 826,366 - LU632_RS04160 0.80 +0.4 826,370 - LU632_RS04160 0.80 +0.3 826,383 - LU632_RS04160 0.82 +0.6 826,427 - LU632_RS04160 0.88 +2.0 826,443 + +0.3 826,446 + -0.3 826,618 + -0.9 826,719 - -0.9 826,754 + -0.2 826,754 + +0.8 826,801 + -0.9 826,852 + +0.0 826,888 - -0.1 826,888 - -0.2 826,999 - LU632_RS04165 0.27 +0.1 827,054 + LU632_RS04165 0.37 -0.4 827,058 + LU632_RS04165 0.38 +1.3 827,097 + LU632_RS04165 0.46 -0.6 827,236 + LU632_RS04165 0.73 -0.3 827,236 + LU632_RS04165 0.73 -0.0 827,256 + LU632_RS04165 0.77 +0.4 827,256 + LU632_RS04165 0.77 +0.8 827,257 - LU632_RS04165 0.77 -0.6 827,335 - -1.1 827,336 + +1.5 827,338 + -1.1 827,338 + +0.9 827,338 + +1.0 827,338 + -1.2 827,339 - +0.7 827,404 + -0.3 827,426 + -1.0 827,426 + +0.0 827,431 + -0.3 827,432 - -0.5 827,466 + -0.6 827,503 - +0.4 827,541 + +0.3 827,556 + -0.8 827,557 - +0.0 827,557 - -0.1 827,557 - +0.7 827,558 + -0.7 827,559 - -0.2 827,574 + -0.4 827,575 - +0.1 827,610 - +0.1 827,610 - -0.1 827,637 + +0.4 827,638 - -1.1 827,698 + +0.4 827,699 - +0.8 827,709 - -0.2 827,709 - +0.1 827,826 + -0.5 827,827 - -0.0 827,827 - +0.0 827,829 + +0.0 827,829 + +0.5 827,829 + +1.0 827,830 - +0.9 827,830 - +0.2 827,834 - -0.5 827,834 - +0.4 827,845 + -0.3 827,847 + +0.6 827,847 + +2.6 827,847 + -0.6 827,847 + +1.0 827,848 - +0.2 827,916 + +0.4 827,916 + -0.1 827,916 + +0.4 827,917 - -0.6 827,917 - -0.4 827,920 - -0.3 827,920 - +0.2 828,002 + LU632_RS04170 0.24 +0.2 828,002 + LU632_RS04170 0.24 -0.1 828,002 + LU632_RS04170 0.24 +1.2 828,003 - LU632_RS04170 0.24 +1.3 828,245 + LU632_RS04170 0.69 -0.2 828,245 + LU632_RS04170 0.69 +1.0 828,245 + LU632_RS04170 0.69 +0.6 828,246 - LU632_RS04170 0.69 +0.6 828,309 - LU632_RS04170 0.80 -1.1 828,309 - LU632_RS04170 0.80 -0.8 828,312 + LU632_RS04170 0.81 +0.0 828,313 - LU632_RS04170 0.81 +0.2
Or see this region's nucleotide sequence