Experiment: MelonXylem
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt vgrG and LU632_RS03905 overlap by 4 nucleotides LU632_RS03905 and LU632_RS03910 are separated by 3 nucleotides
LU632_RS03900: vgrG - type VI secretion system tip protein VgrG, at 781,439 to 783,370
vgrG
LU632_RS03905: LU632_RS03905 - DUF1795 domain-containing protein, at 783,367 to 783,798
_RS03905
LU632_RS03910: LU632_RS03910 - DUF6531 domain-containing protein, at 783,802 to 787,896
_RS03910
Position (kb) 781
782
783
784 Strain fitness (log2 ratio) -1
0
1
2 at 780.502 kb on - strand at 780.507 kb on - strand at 780.890 kb on - strand at 780.923 kb on + strand at 780.967 kb on + strand at 780.967 kb on + strand at 780.968 kb on - strand at 781.050 kb on - strand at 781.050 kb on - strand at 781.239 kb on + strand at 781.251 kb on - strand at 781.305 kb on + strand at 781.305 kb on + strand at 781.306 kb on - strand at 781.306 kb on - strand at 781.435 kb on + strand at 781.439 kb on - strand at 781.439 kb on - strand at 781.439 kb on - strand at 781.710 kb on - strand, within vgrG at 781.762 kb on - strand, within vgrG at 781.795 kb on - strand, within vgrG at 781.831 kb on - strand, within vgrG at 781.935 kb on - strand, within vgrG at 781.937 kb on + strand, within vgrG at 781.937 kb on + strand, within vgrG at 782.211 kb on - strand, within vgrG at 782.347 kb on + strand, within vgrG at 782.347 kb on + strand, within vgrG at 782.348 kb on - strand, within vgrG at 782.387 kb on + strand, within vgrG at 782.388 kb on - strand, within vgrG at 782.408 kb on + strand, within vgrG at 782.409 kb on - strand, within vgrG at 782.409 kb on - strand, within vgrG at 782.429 kb on + strand, within vgrG at 782.429 kb on + strand, within vgrG at 782.474 kb on - strand, within vgrG at 782.474 kb on - strand, within vgrG at 782.498 kb on + strand, within vgrG at 782.498 kb on + strand, within vgrG at 782.594 kb on + strand, within vgrG at 782.595 kb on - strand, within vgrG at 782.740 kb on - strand, within vgrG at 782.747 kb on - strand, within vgrG at 782.789 kb on + strand, within vgrG at 782.789 kb on + strand, within vgrG at 782.790 kb on - strand, within vgrG at 782.954 kb on - strand, within vgrG at 783.093 kb on - strand, within vgrG at 783.271 kb on + strand at 783.347 kb on - strand at 783.520 kb on + strand, within LU632_RS03905 at 783.521 kb on - strand, within LU632_RS03905 at 783.895 kb on + strand at 783.908 kb on + strand at 783.966 kb on - strand at 784.105 kb on - strand at 784.105 kb on - strand at 784.324 kb on + strand, within LU632_RS03910 at 784.337 kb on + strand, within LU632_RS03910 at 784.338 kb on - strand, within LU632_RS03910
Per-strain Table
Position Strand Gene LocusTag Fraction MelonXylem remove 780,502 - +0.6 780,507 - +1.0 780,890 - -0.5 780,923 + -0.3 780,967 + -0.4 780,967 + +1.2 780,968 - -0.6 781,050 - -0.2 781,050 - +0.8 781,239 + -0.6 781,251 - +0.3 781,305 + +0.2 781,305 + +0.6 781,306 - -0.2 781,306 - -0.6 781,435 + +1.6 781,439 - +0.4 781,439 - +0.0 781,439 - +0.8 781,710 - vgrG LU632_RS03900 0.14 +0.0 781,762 - vgrG LU632_RS03900 0.17 +2.0 781,795 - vgrG LU632_RS03900 0.18 +0.4 781,831 - vgrG LU632_RS03900 0.20 +0.1 781,935 - vgrG LU632_RS03900 0.26 -1.0 781,937 + vgrG LU632_RS03900 0.26 +0.6 781,937 + vgrG LU632_RS03900 0.26 -0.6 782,211 - vgrG LU632_RS03900 0.40 +1.2 782,347 + vgrG LU632_RS03900 0.47 -1.0 782,347 + vgrG LU632_RS03900 0.47 -0.1 782,348 - vgrG LU632_RS03900 0.47 -1.3 782,387 + vgrG LU632_RS03900 0.49 +0.3 782,388 - vgrG LU632_RS03900 0.49 -0.4 782,408 + vgrG LU632_RS03900 0.50 +0.2 782,409 - vgrG LU632_RS03900 0.50 +0.3 782,409 - vgrG LU632_RS03900 0.50 +0.7 782,429 + vgrG LU632_RS03900 0.51 -0.4 782,429 + vgrG LU632_RS03900 0.51 +0.5 782,474 - vgrG LU632_RS03900 0.54 +0.4 782,474 - vgrG LU632_RS03900 0.54 -0.2 782,498 + vgrG LU632_RS03900 0.55 -0.0 782,498 + vgrG LU632_RS03900 0.55 +0.2 782,594 + vgrG LU632_RS03900 0.60 -0.9 782,595 - vgrG LU632_RS03900 0.60 -0.0 782,740 - vgrG LU632_RS03900 0.67 +0.5 782,747 - vgrG LU632_RS03900 0.68 +0.1 782,789 + vgrG LU632_RS03900 0.70 +0.3 782,789 + vgrG LU632_RS03900 0.70 +0.4 782,790 - vgrG LU632_RS03900 0.70 -1.0 782,954 - vgrG LU632_RS03900 0.78 +0.6 783,093 - vgrG LU632_RS03900 0.86 -0.3 783,271 + +0.4 783,347 - -0.2 783,520 + LU632_RS03905 0.35 -0.5 783,521 - LU632_RS03905 0.36 +1.3 783,895 + -0.6 783,908 + +0.9 783,966 - -0.2 784,105 - +0.3 784,105 - -0.4 784,324 + LU632_RS03910 0.13 +0.0 784,337 + LU632_RS03910 0.13 -0.6 784,338 - LU632_RS03910 0.13 +0.4
Or see this region's nucleotide sequence