Experiment: MelonXylem
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS02700 and LU632_RS02705 are separated by 60 nucleotides LU632_RS02705 and djlA are separated by 179 nucleotides djlA and lptD are separated by 274 nucleotides
LU632_RS02700: LU632_RS02700 - IS5 family transposase, at 542,615 to 543,440
_RS02700
LU632_RS02705: LU632_RS02705 - IS6 family transposase, at 543,501 to 543,963
_RS02705
LU632_RS02710: djlA - co-chaperone DjlA, at 544,143 to 544,964
djlA
LU632_RS02715: lptD - LPS assembly protein LptD, at 545,239 to 547,641
lptD
Position (kb) 544
545 Strain fitness (log2 ratio) -1
0
1 at 543.471 kb on + strand at 543.471 kb on + strand at 543.473 kb on + strand at 543.473 kb on + strand at 543.473 kb on + strand at 543.501 kb on + strand at 543.501 kb on + strand at 543.503 kb on + strand at 544.047 kb on - strand at 544.047 kb on - strand at 544.049 kb on - strand at 544.054 kb on - strand at 544.129 kb on - strand at 544.145 kb on - strand at 544.148 kb on + strand at 544.149 kb on - strand at 544.149 kb on - strand at 544.191 kb on - strand at 544.276 kb on - strand, within djlA at 544.400 kb on - strand, within djlA at 544.493 kb on + strand, within djlA at 544.498 kb on + strand, within djlA at 544.498 kb on + strand, within djlA at 544.499 kb on - strand, within djlA at 544.579 kb on - strand, within djlA at 544.623 kb on - strand, within djlA at 544.734 kb on - strand, within djlA at 544.896 kb on + strand at 544.897 kb on - strand at 544.964 kb on + strand at 544.965 kb on - strand at 544.965 kb on - strand at 544.965 kb on - strand at 544.965 kb on - strand at 544.966 kb on + strand at 544.966 kb on + strand at 544.966 kb on + strand at 544.966 kb on - strand at 544.966 kb on - strand at 544.967 kb on - strand at 544.967 kb on - strand at 544.967 kb on - strand at 544.967 kb on - strand at 544.967 kb on - strand at 544.967 kb on - strand at 544.967 kb on - strand at 545.005 kb on + strand at 545.021 kb on + strand at 545.022 kb on - strand at 545.075 kb on + strand at 545.075 kb on + strand at 545.186 kb on + strand at 545.186 kb on + strand at 545.186 kb on + strand at 545.187 kb on - strand at 545.187 kb on - strand at 545.187 kb on - strand at 545.188 kb on + strand at 545.188 kb on + strand at 545.212 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction MelonXylem remove 543,471 + +0.3 543,471 + +0.5 543,473 + -1.1 543,473 + -0.2 543,473 + -0.7 543,501 + +0.1 543,501 + -0.6 543,503 + +0.8 544,047 - +0.7 544,047 - -0.5 544,049 - +0.0 544,054 - -0.0 544,129 - -0.0 544,145 - +0.5 544,148 + -0.1 544,149 - -0.0 544,149 - +0.4 544,191 - +0.2 544,276 - djlA LU632_RS02710 0.16 -1.2 544,400 - djlA LU632_RS02710 0.31 +0.7 544,493 + djlA LU632_RS02710 0.43 +0.6 544,498 + djlA LU632_RS02710 0.43 +0.4 544,498 + djlA LU632_RS02710 0.43 -1.2 544,499 - djlA LU632_RS02710 0.43 -0.0 544,579 - djlA LU632_RS02710 0.53 +0.3 544,623 - djlA LU632_RS02710 0.58 +0.2 544,734 - djlA LU632_RS02710 0.72 -0.2 544,896 + -0.5 544,897 - -0.3 544,964 + +1.1 544,965 - +1.0 544,965 - +0.1 544,965 - -0.3 544,965 - +0.2 544,966 + -0.1 544,966 + -0.2 544,966 + -0.3 544,966 - +1.7 544,966 - +1.1 544,967 - -0.5 544,967 - +0.3 544,967 - +0.7 544,967 - -0.4 544,967 - +0.2 544,967 - +0.3 544,967 - +0.5 545,005 + -0.4 545,021 + +0.3 545,022 - +0.1 545,075 + -0.2 545,075 + -0.8 545,186 + -0.2 545,186 + +0.0 545,186 + -1.0 545,187 - +0.2 545,187 - -0.3 545,187 - -0.0 545,188 + -0.5 545,188 + -0.2 545,212 + +0.5
Or see this region's nucleotide sequence