Experiment: MelonXylem
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt mpl and LU632_RS02140 are separated by 61 nucleotides LU632_RS02140 and pmbA are separated by 166 nucleotides
LU632_RS02135: mpl - UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase, at 423,703 to 425,082
mpl
LU632_RS02140: LU632_RS02140 - ribosome-associated protein, at 425,144 to 425,683
_RS02140
LU632_RS02145: pmbA - metalloprotease PmbA, at 425,850 to 427,190
pmbA
Position (kb) 425
426 Strain fitness (log2 ratio) -1
0
1
2 at 424.186 kb on + strand, within mpl at 424.187 kb on - strand, within mpl at 424.300 kb on - strand, within mpl at 424.322 kb on + strand, within mpl at 424.322 kb on + strand, within mpl at 424.322 kb on + strand, within mpl at 424.323 kb on - strand, within mpl at 424.323 kb on - strand, within mpl at 424.618 kb on - strand, within mpl at 424.674 kb on - strand, within mpl at 424.682 kb on - strand, within mpl at 424.725 kb on + strand, within mpl at 424.791 kb on + strand, within mpl at 425.109 kb on - strand at 425.283 kb on - strand, within LU632_RS02140 at 425.365 kb on + strand, within LU632_RS02140 at 425.445 kb on - strand, within LU632_RS02140 at 425.550 kb on - strand, within LU632_RS02140 at 425.730 kb on + strand at 425.757 kb on + strand at 425.775 kb on + strand at 425.775 kb on - strand at 425.833 kb on - strand at 425.906 kb on - strand at 426.141 kb on + strand, within pmbA at 426.308 kb on + strand, within pmbA at 426.344 kb on - strand, within pmbA at 426.344 kb on - strand, within pmbA at 426.382 kb on - strand, within pmbA at 426.450 kb on + strand, within pmbA at 426.450 kb on + strand, within pmbA at 426.450 kb on + strand, within pmbA at 426.451 kb on - strand, within pmbA at 426.456 kb on + strand, within pmbA at 426.456 kb on + strand, within pmbA at 426.456 kb on + strand, within pmbA at 426.456 kb on + strand, within pmbA at 426.457 kb on - strand, within pmbA at 426.457 kb on - strand, within pmbA at 426.457 kb on - strand, within pmbA at 426.458 kb on + strand, within pmbA at 426.458 kb on + strand, within pmbA at 426.461 kb on + strand, within pmbA at 426.527 kb on - strand, within pmbA at 426.548 kb on + strand, within pmbA at 426.548 kb on + strand, within pmbA at 426.548 kb on + strand, within pmbA at 426.630 kb on - strand, within pmbA
Per-strain Table
Position Strand Gene LocusTag Fraction MelonXylem remove 424,186 + mpl LU632_RS02135 0.35 -0.5 424,187 - mpl LU632_RS02135 0.35 -0.4 424,300 - mpl LU632_RS02135 0.43 -0.5 424,322 + mpl LU632_RS02135 0.45 -0.5 424,322 + mpl LU632_RS02135 0.45 -0.7 424,322 + mpl LU632_RS02135 0.45 -0.2 424,323 - mpl LU632_RS02135 0.45 -0.3 424,323 - mpl LU632_RS02135 0.45 -0.3 424,618 - mpl LU632_RS02135 0.66 +1.1 424,674 - mpl LU632_RS02135 0.70 +1.9 424,682 - mpl LU632_RS02135 0.71 -0.9 424,725 + mpl LU632_RS02135 0.74 -1.5 424,791 + mpl LU632_RS02135 0.79 -0.2 425,109 - +0.5 425,283 - LU632_RS02140 0.26 -1.1 425,365 + LU632_RS02140 0.41 -0.0 425,445 - LU632_RS02140 0.56 +1.1 425,550 - LU632_RS02140 0.75 -1.7 425,730 + -1.0 425,757 + +0.0 425,775 + -0.0 425,775 - +0.3 425,833 - -0.0 425,906 - -0.5 426,141 + pmbA LU632_RS02145 0.22 -0.1 426,308 + pmbA LU632_RS02145 0.34 -0.9 426,344 - pmbA LU632_RS02145 0.37 -0.1 426,344 - pmbA LU632_RS02145 0.37 -0.2 426,382 - pmbA LU632_RS02145 0.40 +0.4 426,450 + pmbA LU632_RS02145 0.45 -0.2 426,450 + pmbA LU632_RS02145 0.45 +0.0 426,450 + pmbA LU632_RS02145 0.45 -0.4 426,451 - pmbA LU632_RS02145 0.45 -0.5 426,456 + pmbA LU632_RS02145 0.45 -0.2 426,456 + pmbA LU632_RS02145 0.45 -0.3 426,456 + pmbA LU632_RS02145 0.45 -1.6 426,456 + pmbA LU632_RS02145 0.45 -0.1 426,457 - pmbA LU632_RS02145 0.45 -0.2 426,457 - pmbA LU632_RS02145 0.45 -0.4 426,457 - pmbA LU632_RS02145 0.45 -0.4 426,458 + pmbA LU632_RS02145 0.45 -0.6 426,458 + pmbA LU632_RS02145 0.45 -0.6 426,461 + pmbA LU632_RS02145 0.46 -0.2 426,527 - pmbA LU632_RS02145 0.50 -0.5 426,548 + pmbA LU632_RS02145 0.52 -1.7 426,548 + pmbA LU632_RS02145 0.52 -0.6 426,548 + pmbA LU632_RS02145 0.52 -0.9 426,630 - pmbA LU632_RS02145 0.58 +0.1
Or see this region's nucleotide sequence