Experiment: MelonXylem
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS02100 and LU632_RS02105 are separated by 519 nucleotides LU632_RS02105 and LU632_RS02110 overlap by 4 nucleotides
LU632_RS02100: LU632_RS02100 - hemolysin family protein, at 411,874 to 413,205
_RS02100
LU632_RS02105: LU632_RS02105 - autotransporter assembly complex protein TamA, at 413,725 to 415,449
_RS02105
LU632_RS02110: LU632_RS02110 - translocation/assembly module TamB, at 415,446 to 419,213
_RS02110
Position (kb) 413
414
415
416 Strain fitness (log2 ratio) -2
-1
0
1
2 at 412.725 kb on + strand, within LU632_RS02100 at 412.899 kb on + strand, within LU632_RS02100 at 412.900 kb on - strand, within LU632_RS02100 at 413.061 kb on + strand, within LU632_RS02100 at 413.082 kb on + strand at 413.083 kb on - strand at 413.083 kb on - strand at 413.166 kb on + strand at 413.197 kb on - strand at 413.197 kb on - strand at 413.201 kb on - strand at 413.205 kb on + strand at 413.216 kb on + strand at 413.216 kb on + strand at 413.246 kb on - strand at 413.398 kb on + strand at 413.399 kb on - strand at 413.406 kb on + strand at 413.428 kb on + strand at 413.434 kb on + strand at 413.435 kb on - strand at 413.473 kb on + strand at 413.477 kb on + strand at 413.477 kb on + strand at 413.486 kb on + strand at 413.487 kb on - strand at 413.494 kb on + strand at 413.497 kb on - strand at 413.545 kb on - strand at 413.569 kb on + strand at 413.570 kb on - strand at 413.570 kb on - strand at 413.642 kb on + strand at 413.697 kb on + strand at 413.720 kb on - strand at 413.732 kb on - strand at 413.904 kb on - strand, within LU632_RS02105 at 413.904 kb on - strand, within LU632_RS02105 at 413.932 kb on + strand, within LU632_RS02105 at 414.006 kb on - strand, within LU632_RS02105 at 414.021 kb on + strand, within LU632_RS02105 at 414.080 kb on - strand, within LU632_RS02105 at 414.123 kb on - strand, within LU632_RS02105 at 414.140 kb on - strand, within LU632_RS02105 at 414.150 kb on + strand, within LU632_RS02105 at 414.168 kb on + strand, within LU632_RS02105 at 414.202 kb on + strand, within LU632_RS02105 at 414.203 kb on - strand, within LU632_RS02105 at 414.364 kb on + strand, within LU632_RS02105 at 414.364 kb on + strand, within LU632_RS02105 at 414.364 kb on + strand, within LU632_RS02105 at 414.365 kb on - strand, within LU632_RS02105 at 414.368 kb on - strand, within LU632_RS02105 at 414.423 kb on + strand, within LU632_RS02105 at 414.514 kb on - strand, within LU632_RS02105 at 414.530 kb on + strand, within LU632_RS02105 at 414.530 kb on + strand, within LU632_RS02105 at 414.530 kb on + strand, within LU632_RS02105 at 414.536 kb on - strand, within LU632_RS02105 at 414.591 kb on + strand, within LU632_RS02105 at 414.595 kb on + strand, within LU632_RS02105 at 414.658 kb on + strand, within LU632_RS02105 at 414.661 kb on - strand, within LU632_RS02105 at 414.694 kb on + strand, within LU632_RS02105 at 414.694 kb on + strand, within LU632_RS02105 at 414.695 kb on - strand, within LU632_RS02105 at 414.695 kb on - strand, within LU632_RS02105 at 414.697 kb on + strand, within LU632_RS02105 at 414.698 kb on - strand, within LU632_RS02105 at 414.698 kb on - strand, within LU632_RS02105 at 414.698 kb on - strand, within LU632_RS02105 at 414.738 kb on + strand, within LU632_RS02105 at 415.159 kb on - strand, within LU632_RS02105 at 415.231 kb on + strand, within LU632_RS02105 at 415.232 kb on - strand, within LU632_RS02105 at 415.237 kb on + strand, within LU632_RS02105 at 415.238 kb on - strand, within LU632_RS02105 at 415.238 kb on - strand, within LU632_RS02105 at 415.239 kb on + strand, within LU632_RS02105 at 415.239 kb on + strand, within LU632_RS02105 at 415.239 kb on + strand, within LU632_RS02105 at 415.413 kb on + strand at 415.415 kb on + strand at 415.415 kb on + strand at 415.415 kb on + strand at 415.416 kb on - strand at 415.416 kb on - strand at 415.416 kb on - strand at 415.416 kb on - strand at 415.416 kb on - strand at 415.416 kb on - strand at 415.416 kb on - strand at 415.424 kb on - strand at 415.424 kb on - strand at 415.446 kb on - strand at 415.496 kb on - strand at 415.498 kb on + strand at 415.498 kb on + strand at 415.498 kb on + strand at 415.502 kb on + strand at 415.520 kb on - strand at 415.661 kb on + strand at 415.859 kb on + strand, within LU632_RS02110 at 415.859 kb on + strand, within LU632_RS02110 at 415.859 kb on + strand, within LU632_RS02110 at 415.860 kb on - strand, within LU632_RS02110 at 415.871 kb on + strand, within LU632_RS02110 at 415.871 kb on + strand, within LU632_RS02110 at 415.872 kb on - strand, within LU632_RS02110 at 415.872 kb on - strand, within LU632_RS02110 at 415.875 kb on - strand, within LU632_RS02110 at 416.027 kb on - strand, within LU632_RS02110 at 416.143 kb on + strand, within LU632_RS02110 at 416.171 kb on + strand, within LU632_RS02110 at 416.172 kb on - strand, within LU632_RS02110 at 416.172 kb on - strand, within LU632_RS02110 at 416.172 kb on - strand, within LU632_RS02110 at 416.199 kb on - strand, within LU632_RS02110 at 416.209 kb on + strand, within LU632_RS02110 at 416.209 kb on + strand, within LU632_RS02110 at 416.210 kb on - strand, within LU632_RS02110 at 416.237 kb on - strand, within LU632_RS02110 at 416.312 kb on + strand, within LU632_RS02110 at 416.340 kb on - strand, within LU632_RS02110
Per-strain Table
Position Strand Gene LocusTag Fraction MelonXylem remove 412,725 + LU632_RS02100 0.64 -1.2 412,899 + LU632_RS02100 0.77 +0.8 412,900 - LU632_RS02100 0.77 +0.9 413,061 + LU632_RS02100 0.89 +0.6 413,082 + +2.7 413,083 - -0.6 413,083 - -0.7 413,166 + -0.2 413,197 - -0.3 413,197 - -0.2 413,201 - +0.7 413,205 + -0.1 413,216 + +0.3 413,216 + +0.2 413,246 - +0.2 413,398 + -0.9 413,399 - -0.3 413,406 + -0.1 413,428 + +0.6 413,434 + +0.1 413,435 - +0.1 413,473 + +0.5 413,477 + +0.3 413,477 + +0.6 413,486 + +1.3 413,487 - +2.1 413,494 + +0.5 413,497 - +1.1 413,545 - -0.2 413,569 + +0.3 413,570 - -0.7 413,570 - +1.1 413,642 + +0.1 413,697 + +0.2 413,720 - -0.9 413,732 - -0.2 413,904 - LU632_RS02105 0.10 -1.0 413,904 - LU632_RS02105 0.10 -0.9 413,932 + LU632_RS02105 0.12 -0.9 414,006 - LU632_RS02105 0.16 -0.9 414,021 + LU632_RS02105 0.17 -0.9 414,080 - LU632_RS02105 0.21 -2.6 414,123 - LU632_RS02105 0.23 +0.0 414,140 - LU632_RS02105 0.24 +1.1 414,150 + LU632_RS02105 0.25 -0.3 414,168 + LU632_RS02105 0.26 +0.1 414,202 + LU632_RS02105 0.28 -1.5 414,203 - LU632_RS02105 0.28 -0.0 414,364 + LU632_RS02105 0.37 -0.6 414,364 + LU632_RS02105 0.37 -1.5 414,364 + LU632_RS02105 0.37 -0.6 414,365 - LU632_RS02105 0.37 -0.3 414,368 - LU632_RS02105 0.37 +0.3 414,423 + LU632_RS02105 0.40 -0.8 414,514 - LU632_RS02105 0.46 -1.5 414,530 + LU632_RS02105 0.47 -0.7 414,530 + LU632_RS02105 0.47 -1.7 414,530 + LU632_RS02105 0.47 -0.5 414,536 - LU632_RS02105 0.47 -1.1 414,591 + LU632_RS02105 0.50 +0.4 414,595 + LU632_RS02105 0.50 -1.5 414,658 + LU632_RS02105 0.54 -0.5 414,661 - LU632_RS02105 0.54 -0.9 414,694 + LU632_RS02105 0.56 -0.2 414,694 + LU632_RS02105 0.56 -0.5 414,695 - LU632_RS02105 0.56 -0.4 414,695 - LU632_RS02105 0.56 -1.4 414,697 + LU632_RS02105 0.56 -1.1 414,698 - LU632_RS02105 0.56 -1.6 414,698 - LU632_RS02105 0.56 -1.1 414,698 - LU632_RS02105 0.56 -1.2 414,738 + LU632_RS02105 0.59 +0.4 415,159 - LU632_RS02105 0.83 -1.7 415,231 + LU632_RS02105 0.87 -1.5 415,232 - LU632_RS02105 0.87 -0.5 415,237 + LU632_RS02105 0.88 -1.0 415,238 - LU632_RS02105 0.88 -1.9 415,238 - LU632_RS02105 0.88 -0.5 415,239 + LU632_RS02105 0.88 -1.5 415,239 + LU632_RS02105 0.88 -1.0 415,239 + LU632_RS02105 0.88 -1.7 415,413 + -2.0 415,415 + -0.9 415,415 + -1.2 415,415 + -0.9 415,416 - -0.1 415,416 - -1.3 415,416 - -0.6 415,416 - -0.0 415,416 - +0.4 415,416 - -1.0 415,416 - -1.6 415,424 - -1.7 415,424 - +0.3 415,446 - -2.3 415,496 - -1.2 415,498 + +0.3 415,498 + -1.7 415,498 + -1.1 415,502 + -1.9 415,520 - -1.3 415,661 + -2.0 415,859 + LU632_RS02110 0.11 -0.9 415,859 + LU632_RS02110 0.11 -0.7 415,859 + LU632_RS02110 0.11 -0.7 415,860 - LU632_RS02110 0.11 -2.2 415,871 + LU632_RS02110 0.11 -0.6 415,871 + LU632_RS02110 0.11 -1.7 415,872 - LU632_RS02110 0.11 -0.9 415,872 - LU632_RS02110 0.11 -0.7 415,875 - LU632_RS02110 0.11 -0.9 416,027 - LU632_RS02110 0.15 -2.0 416,143 + LU632_RS02110 0.18 -0.8 416,171 + LU632_RS02110 0.19 -1.3 416,172 - LU632_RS02110 0.19 -0.1 416,172 - LU632_RS02110 0.19 +0.3 416,172 - LU632_RS02110 0.19 +0.1 416,199 - LU632_RS02110 0.20 -0.0 416,209 + LU632_RS02110 0.20 -1.7 416,209 + LU632_RS02110 0.20 -0.8 416,210 - LU632_RS02110 0.20 -1.9 416,237 - LU632_RS02110 0.21 -0.7 416,312 + LU632_RS02110 0.23 -2.6 416,340 - LU632_RS02110 0.24 -1.8
Or see this region's nucleotide sequence