Experiment: MelonXylem
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS01385 and LU632_RS01390 are separated by 0 nucleotides LU632_RS01390 and LU632_RS01395 are separated by 36 nucleotides LU632_RS01395 and LU632_RS01400 are separated by 11 nucleotides LU632_RS01400 and LU632_RS01405 are separated by 85 nucleotides LU632_RS01405 and LU632_RS01410 are separated by 8 nucleotides
LU632_RS01385: LU632_RS01385 - hypothetical protein, at 288,727 to 289,080
_RS01385
LU632_RS01390: LU632_RS01390 - TIGR03758 family integrating conjugative element protein, at 289,081 to 289,209
_RS01390
LU632_RS01395: LU632_RS01395 - TIGR03745 family integrating conjugative element membrane protein, at 289,246 to 289,623
_RS01395
LU632_RS01400: LU632_RS01400 - TIGR03750 family conjugal transfer protein, at 289,635 to 289,724
_RS01400
LU632_RS01405: LU632_RS01405 - TIGR03749 family integrating conjugative element protein, at 289,810 to 290,676
_RS01405
LU632_RS01410: LU632_RS01410 - TIGR03752 family integrating conjugative element protein, at 290,685 to 292,199
_RS01410
Position (kb) 289
290
291 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 289.000 kb on - strand, within LU632_RS01385 at 289.215 kb on - strand at 289.227 kb on - strand at 289.227 kb on - strand at 289.328 kb on + strand, within LU632_RS01395 at 289.329 kb on - strand, within LU632_RS01395 at 289.332 kb on + strand, within LU632_RS01395 at 289.332 kb on + strand, within LU632_RS01395 at 289.333 kb on - strand, within LU632_RS01395 at 289.415 kb on - strand, within LU632_RS01395 at 289.420 kb on - strand, within LU632_RS01395 at 289.489 kb on - strand, within LU632_RS01395 at 289.489 kb on - strand, within LU632_RS01395 at 289.495 kb on - strand, within LU632_RS01395 at 289.715 kb on + strand, within LU632_RS01400 at 289.936 kb on - strand, within LU632_RS01405 at 289.936 kb on - strand, within LU632_RS01405 at 289.983 kb on + strand, within LU632_RS01405 at 290.137 kb on + strand, within LU632_RS01405 at 290.138 kb on - strand, within LU632_RS01405 at 290.248 kb on - strand, within LU632_RS01405 at 290.462 kb on + strand, within LU632_RS01405 at 290.468 kb on + strand, within LU632_RS01405 at 290.468 kb on + strand, within LU632_RS01405 at 290.469 kb on - strand, within LU632_RS01405 at 290.473 kb on - strand, within LU632_RS01405 at 290.487 kb on + strand, within LU632_RS01405 at 290.593 kb on + strand at 290.594 kb on - strand at 290.629 kb on - strand at 290.713 kb on + strand at 290.714 kb on - strand at 290.936 kb on + strand, within LU632_RS01410 at 290.936 kb on + strand, within LU632_RS01410 at 290.998 kb on + strand, within LU632_RS01410 at 290.998 kb on + strand, within LU632_RS01410 at 290.999 kb on - strand, within LU632_RS01410 at 291.306 kb on - strand, within LU632_RS01410 at 291.441 kb on + strand, within LU632_RS01410 at 291.503 kb on + strand, within LU632_RS01410 at 291.503 kb on + strand, within LU632_RS01410 at 291.504 kb on - strand, within LU632_RS01410 at 291.504 kb on - strand, within LU632_RS01410
Per-strain Table
Position Strand Gene LocusTag Fraction MelonXylem remove 289,000 - LU632_RS01385 0.77 -0.1 289,215 - -0.0 289,227 - +0.4 289,227 - +1.0 289,328 + LU632_RS01395 0.22 -0.3 289,329 - LU632_RS01395 0.22 +0.2 289,332 + LU632_RS01395 0.23 +0.1 289,332 + LU632_RS01395 0.23 +0.4 289,333 - LU632_RS01395 0.23 -0.4 289,415 - LU632_RS01395 0.45 -0.3 289,420 - LU632_RS01395 0.46 -0.7 289,489 - LU632_RS01395 0.64 +0.1 289,489 - LU632_RS01395 0.64 -0.8 289,495 - LU632_RS01395 0.66 +0.3 289,715 + LU632_RS01400 0.89 +1.1 289,936 - LU632_RS01405 0.15 -1.9 289,936 - LU632_RS01405 0.15 -0.6 289,983 + LU632_RS01405 0.20 +0.1 290,137 + LU632_RS01405 0.38 -0.8 290,138 - LU632_RS01405 0.38 -1.2 290,248 - LU632_RS01405 0.51 -0.9 290,462 + LU632_RS01405 0.75 -1.3 290,468 + LU632_RS01405 0.76 +1.1 290,468 + LU632_RS01405 0.76 +0.1 290,469 - LU632_RS01405 0.76 +0.8 290,473 - LU632_RS01405 0.76 -2.8 290,487 + LU632_RS01405 0.78 +0.3 290,593 + -0.4 290,594 - -0.4 290,629 - +0.1 290,713 + -0.8 290,714 - +0.7 290,936 + LU632_RS01410 0.17 -0.1 290,936 + LU632_RS01410 0.17 -0.4 290,998 + LU632_RS01410 0.21 -1.2 290,998 + LU632_RS01410 0.21 -1.3 290,999 - LU632_RS01410 0.21 +0.3 291,306 - LU632_RS01410 0.41 +1.1 291,441 + LU632_RS01410 0.50 +0.8 291,503 + LU632_RS01410 0.54 +0.1 291,503 + LU632_RS01410 0.54 -0.0 291,504 - LU632_RS01410 0.54 -0.1 291,504 - LU632_RS01410 0.54 +0.1
Or see this region's nucleotide sequence