Experiment: MelonXylem
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt pepD and gpt are separated by 252 nucleotides gpt and frsA are separated by 131 nucleotides
LU632_RS01155: pepD - beta-Ala-His dipeptidase, at 245,416 to 246,873
pepD
LU632_RS01160: gpt - xanthine phosphoribosyltransferase, at 247,126 to 247,584
gpt
LU632_RS01165: frsA - esterase FrsA, at 247,716 to 248,948
frsA
Position (kb) 247
248 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 246.157 kb on + strand, within pepD at 246.157 kb on + strand, within pepD at 246.157 kb on + strand, within pepD at 246.189 kb on + strand, within pepD at 246.216 kb on + strand, within pepD at 246.216 kb on + strand, within pepD at 246.217 kb on - strand, within pepD at 246.270 kb on + strand, within pepD at 246.271 kb on - strand, within pepD at 246.344 kb on + strand, within pepD at 246.344 kb on + strand, within pepD at 246.344 kb on + strand, within pepD at 246.344 kb on + strand, within pepD at 246.345 kb on - strand, within pepD at 246.345 kb on - strand, within pepD at 246.345 kb on - strand, within pepD at 246.345 kb on - strand, within pepD at 246.345 kb on - strand, within pepD at 246.345 kb on - strand, within pepD at 246.601 kb on - strand, within pepD at 246.610 kb on + strand, within pepD at 246.610 kb on + strand, within pepD at 246.611 kb on - strand, within pepD at 246.712 kb on - strand, within pepD at 246.723 kb on + strand, within pepD at 246.724 kb on - strand, within pepD at 246.768 kb on + strand at 246.768 kb on + strand at 246.771 kb on - strand at 246.771 kb on - strand at 246.876 kb on + strand at 246.887 kb on + strand at 246.888 kb on - strand at 246.982 kb on - strand at 246.999 kb on - strand at 247.061 kb on + strand at 247.229 kb on + strand, within gpt at 247.298 kb on + strand, within gpt at 247.435 kb on + strand, within gpt at 247.560 kb on + strand at 247.667 kb on + strand at 247.667 kb on + strand at 247.667 kb on - strand at 247.697 kb on + strand at 247.698 kb on - strand at 247.702 kb on + strand at 247.703 kb on - strand at 247.703 kb on - strand at 247.734 kb on - strand at 247.806 kb on + strand at 247.806 kb on + strand at 247.807 kb on - strand at 247.862 kb on - strand, within frsA at 247.919 kb on - strand, within frsA at 248.153 kb on - strand, within frsA at 248.169 kb on + strand, within frsA at 248.245 kb on - strand, within frsA at 248.390 kb on + strand, within frsA at 248.390 kb on + strand, within frsA
Per-strain Table
Position Strand Gene LocusTag Fraction MelonXylem remove 246,157 + pepD LU632_RS01155 0.51 -0.2 246,157 + pepD LU632_RS01155 0.51 +0.8 246,157 + pepD LU632_RS01155 0.51 +0.2 246,189 + pepD LU632_RS01155 0.53 -0.6 246,216 + pepD LU632_RS01155 0.55 -2.1 246,216 + pepD LU632_RS01155 0.55 -1.6 246,217 - pepD LU632_RS01155 0.55 -0.3 246,270 + pepD LU632_RS01155 0.59 -0.3 246,271 - pepD LU632_RS01155 0.59 -1.0 246,344 + pepD LU632_RS01155 0.64 +0.9 246,344 + pepD LU632_RS01155 0.64 +0.7 246,344 + pepD LU632_RS01155 0.64 +2.2 246,344 + pepD LU632_RS01155 0.64 -0.8 246,345 - pepD LU632_RS01155 0.64 -0.0 246,345 - pepD LU632_RS01155 0.64 -0.2 246,345 - pepD LU632_RS01155 0.64 -0.1 246,345 - pepD LU632_RS01155 0.64 -0.2 246,345 - pepD LU632_RS01155 0.64 -0.2 246,345 - pepD LU632_RS01155 0.64 +0.9 246,601 - pepD LU632_RS01155 0.81 -1.4 246,610 + pepD LU632_RS01155 0.82 +0.6 246,610 + pepD LU632_RS01155 0.82 +0.8 246,611 - pepD LU632_RS01155 0.82 -1.5 246,712 - pepD LU632_RS01155 0.89 -0.5 246,723 + pepD LU632_RS01155 0.90 -0.1 246,724 - pepD LU632_RS01155 0.90 -0.0 246,768 + -0.3 246,768 + -0.5 246,771 - +0.6 246,771 - -0.1 246,876 + +0.1 246,887 + +1.2 246,888 - +1.2 246,982 - +3.2 246,999 - +0.8 247,061 + -1.2 247,229 + gpt LU632_RS01160 0.22 -0.1 247,298 + gpt LU632_RS01160 0.37 -0.6 247,435 + gpt LU632_RS01160 0.67 +0.2 247,560 + +0.6 247,667 + -0.7 247,667 + -0.5 247,667 - -0.2 247,697 + +2.2 247,698 - -0.4 247,702 + -0.6 247,703 - +0.4 247,703 - -0.2 247,734 - +0.4 247,806 + +1.6 247,806 + +0.3 247,807 - +0.3 247,862 - frsA LU632_RS01165 0.12 -0.3 247,919 - frsA LU632_RS01165 0.16 +0.9 248,153 - frsA LU632_RS01165 0.35 -1.0 248,169 + frsA LU632_RS01165 0.37 +0.6 248,245 - frsA LU632_RS01165 0.43 -0.3 248,390 + frsA LU632_RS01165 0.55 -0.4 248,390 + frsA LU632_RS01165 0.55 +0.1
Or see this region's nucleotide sequence