Experiment: MelonXylem
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS00235 and LU632_RS00240 are separated by 105 nucleotides LU632_RS00240 and eptB are separated by 277 nucleotides eptB and cirA are separated by 94 nucleotides
LU632_RS00235: LU632_RS00235 - MarR family transcriptional regulator, at 44,944 to 45,402
_RS00235
LU632_RS00240: LU632_RS00240 - organic hydroperoxide resistance protein, at 45,508 to 45,936
_RS00240
LU632_RS00245: eptB - 'kdo(2)-lipid A phosphoethanolamine 7''-transferase' pseudo=_no_value transl_table=11, at 46,214 to 47,913
eptB
LU632_RS00250: cirA - catecholate siderophore receptor CirA, at 48,008 to 49,969
cirA
Position (kb) 46
47
48 Strain fitness (log2 ratio) -2
-1
0
1
2 at 45.254 kb on + strand, within LU632_RS00235 at 45.487 kb on + strand at 45.488 kb on - strand at 45.527 kb on + strand at 45.527 kb on + strand at 45.528 kb on - strand at 45.529 kb on + strand at 45.612 kb on - strand, within LU632_RS00240 at 45.644 kb on + strand, within LU632_RS00240 at 45.648 kb on + strand, within LU632_RS00240 at 45.733 kb on - strand, within LU632_RS00240 at 45.751 kb on - strand, within LU632_RS00240 at 45.813 kb on + strand, within LU632_RS00240 at 45.814 kb on - strand, within LU632_RS00240 at 45.814 kb on - strand, within LU632_RS00240 at 45.814 kb on - strand, within LU632_RS00240 at 45.815 kb on + strand, within LU632_RS00240 at 45.815 kb on + strand, within LU632_RS00240 at 45.815 kb on + strand, within LU632_RS00240 at 45.815 kb on + strand, within LU632_RS00240 at 45.940 kb on + strand at 46.019 kb on + strand at 46.019 kb on + strand at 46.038 kb on + strand at 46.041 kb on + strand at 46.051 kb on + strand at 46.110 kb on - strand at 46.123 kb on + strand at 46.180 kb on + strand at 46.180 kb on + strand at 46.220 kb on + strand at 46.221 kb on - strand at 46.224 kb on + strand at 46.268 kb on + strand at 46.268 kb on + strand at 46.438 kb on - strand, within eptB at 46.480 kb on + strand, within eptB at 46.480 kb on + strand, within eptB at 46.483 kb on + strand, within eptB at 46.483 kb on + strand, within eptB at 46.484 kb on - strand, within eptB at 46.484 kb on - strand, within eptB at 46.484 kb on - strand, within eptB at 46.484 kb on - strand, within eptB at 46.484 kb on - strand, within eptB at 46.484 kb on - strand, within eptB at 46.484 kb on - strand, within eptB at 46.484 kb on - strand, within eptB at 46.484 kb on - strand, within eptB at 46.573 kb on + strand, within eptB at 46.620 kb on - strand, within eptB at 46.762 kb on - strand, within eptB at 46.782 kb on + strand, within eptB at 46.793 kb on - strand, within eptB at 46.823 kb on - strand, within eptB at 46.857 kb on - strand, within eptB at 46.864 kb on + strand, within eptB at 46.864 kb on + strand, within eptB at 46.867 kb on - strand, within eptB at 46.927 kb on + strand, within eptB at 46.927 kb on + strand, within eptB at 46.954 kb on - strand, within eptB at 46.954 kb on - strand, within eptB at 46.957 kb on + strand, within eptB at 46.957 kb on + strand, within eptB at 46.958 kb on - strand, within eptB at 46.958 kb on - strand, within eptB at 46.958 kb on - strand, within eptB at 46.958 kb on - strand, within eptB at 46.998 kb on + strand, within eptB at 47.034 kb on + strand, within eptB at 47.034 kb on + strand, within eptB at 47.035 kb on - strand, within eptB at 47.035 kb on - strand, within eptB at 47.035 kb on - strand, within eptB at 47.112 kb on + strand, within eptB at 47.112 kb on + strand, within eptB at 47.112 kb on + strand, within eptB at 47.113 kb on - strand, within eptB at 47.160 kb on - strand, within eptB at 47.202 kb on + strand, within eptB at 47.242 kb on + strand, within eptB at 47.266 kb on + strand, within eptB at 47.267 kb on - strand, within eptB at 47.285 kb on + strand, within eptB at 47.285 kb on + strand, within eptB at 47.325 kb on + strand, within eptB at 47.413 kb on + strand, within eptB at 47.413 kb on + strand, within eptB at 47.414 kb on - strand, within eptB at 47.414 kb on - strand, within eptB at 47.443 kb on + strand, within eptB at 47.517 kb on + strand, within eptB at 47.518 kb on - strand, within eptB at 47.531 kb on - strand, within eptB at 47.575 kb on - strand, within eptB at 47.644 kb on - strand, within eptB at 47.706 kb on + strand, within eptB at 47.710 kb on + strand, within eptB at 47.711 kb on - strand, within eptB at 47.805 kb on + strand at 47.806 kb on - strand at 47.806 kb on - strand at 47.806 kb on - strand at 47.824 kb on + strand at 47.825 kb on - strand at 47.826 kb on + strand at 47.827 kb on - strand at 47.833 kb on - strand at 47.833 kb on - strand at 47.947 kb on + strand at 48.064 kb on - strand at 48.064 kb on - strand at 48.164 kb on - strand at 48.216 kb on + strand, within cirA at 48.216 kb on + strand, within cirA at 48.307 kb on + strand, within cirA at 48.342 kb on + strand, within cirA at 48.343 kb on - strand, within cirA at 48.343 kb on - strand, within cirA at 48.347 kb on - strand, within cirA at 48.348 kb on + strand, within cirA at 48.349 kb on - strand, within cirA at 48.432 kb on + strand, within cirA at 48.432 kb on + strand, within cirA at 48.432 kb on + strand, within cirA at 48.432 kb on + strand, within cirA at 48.433 kb on - strand, within cirA at 48.433 kb on - strand, within cirA at 48.591 kb on + strand, within cirA at 48.591 kb on + strand, within cirA at 48.652 kb on + strand, within cirA at 48.801 kb on + strand, within cirA
Per-strain Table
Position Strand Gene LocusTag Fraction MelonXylem remove 45,254 + LU632_RS00235 0.68 +0.1 45,487 + -0.7 45,488 - +0.2 45,527 + +0.9 45,527 + -0.7 45,528 - +0.7 45,529 + +1.2 45,612 - LU632_RS00240 0.24 +0.7 45,644 + LU632_RS00240 0.32 -0.4 45,648 + LU632_RS00240 0.33 +0.4 45,733 - LU632_RS00240 0.52 +0.6 45,751 - LU632_RS00240 0.57 -0.1 45,813 + LU632_RS00240 0.71 +2.5 45,814 - LU632_RS00240 0.71 +0.2 45,814 - LU632_RS00240 0.71 -0.2 45,814 - LU632_RS00240 0.71 +0.1 45,815 + LU632_RS00240 0.72 -0.1 45,815 + LU632_RS00240 0.72 +0.4 45,815 + LU632_RS00240 0.72 -0.5 45,815 + LU632_RS00240 0.72 +0.3 45,940 + +0.3 46,019 + +0.3 46,019 + +0.2 46,038 + -0.2 46,041 + -0.5 46,051 + -0.1 46,110 - -0.6 46,123 + -0.2 46,180 + -0.5 46,180 + +0.0 46,220 + -0.7 46,221 - +0.1 46,224 + -0.1 46,268 + +0.5 46,268 + +0.2 46,438 - eptB LU632_RS00245 0.13 -0.7 46,480 + eptB LU632_RS00245 0.16 +0.5 46,480 + eptB LU632_RS00245 0.16 +0.2 46,483 + eptB LU632_RS00245 0.16 +0.7 46,483 + eptB LU632_RS00245 0.16 +0.4 46,484 - eptB LU632_RS00245 0.16 +0.1 46,484 - eptB LU632_RS00245 0.16 -0.4 46,484 - eptB LU632_RS00245 0.16 -0.7 46,484 - eptB LU632_RS00245 0.16 +0.1 46,484 - eptB LU632_RS00245 0.16 +0.5 46,484 - eptB LU632_RS00245 0.16 -0.4 46,484 - eptB LU632_RS00245 0.16 -0.6 46,484 - eptB LU632_RS00245 0.16 +0.1 46,484 - eptB LU632_RS00245 0.16 +0.5 46,573 + eptB LU632_RS00245 0.21 -0.2 46,620 - eptB LU632_RS00245 0.24 +0.5 46,762 - eptB LU632_RS00245 0.32 -0.4 46,782 + eptB LU632_RS00245 0.33 +1.2 46,793 - eptB LU632_RS00245 0.34 +0.2 46,823 - eptB LU632_RS00245 0.36 +0.3 46,857 - eptB LU632_RS00245 0.38 +0.1 46,864 + eptB LU632_RS00245 0.38 +0.3 46,864 + eptB LU632_RS00245 0.38 -0.2 46,867 - eptB LU632_RS00245 0.38 -0.3 46,927 + eptB LU632_RS00245 0.42 +0.4 46,927 + eptB LU632_RS00245 0.42 -0.0 46,954 - eptB LU632_RS00245 0.44 +0.3 46,954 - eptB LU632_RS00245 0.44 -0.2 46,957 + eptB LU632_RS00245 0.44 +0.6 46,957 + eptB LU632_RS00245 0.44 -0.1 46,958 - eptB LU632_RS00245 0.44 +1.2 46,958 - eptB LU632_RS00245 0.44 +0.2 46,958 - eptB LU632_RS00245 0.44 -0.0 46,958 - eptB LU632_RS00245 0.44 -0.8 46,998 + eptB LU632_RS00245 0.46 +1.8 47,034 + eptB LU632_RS00245 0.48 +0.3 47,034 + eptB LU632_RS00245 0.48 -1.0 47,035 - eptB LU632_RS00245 0.48 -0.1 47,035 - eptB LU632_RS00245 0.48 +0.2 47,035 - eptB LU632_RS00245 0.48 -0.0 47,112 + eptB LU632_RS00245 0.53 -2.4 47,112 + eptB LU632_RS00245 0.53 +1.6 47,112 + eptB LU632_RS00245 0.53 -0.6 47,113 - eptB LU632_RS00245 0.53 -0.5 47,160 - eptB LU632_RS00245 0.56 -0.8 47,202 + eptB LU632_RS00245 0.58 +0.3 47,242 + eptB LU632_RS00245 0.60 -0.7 47,266 + eptB LU632_RS00245 0.62 -1.0 47,267 - eptB LU632_RS00245 0.62 -0.1 47,285 + eptB LU632_RS00245 0.63 -0.4 47,285 + eptB LU632_RS00245 0.63 +1.2 47,325 + eptB LU632_RS00245 0.65 -0.4 47,413 + eptB LU632_RS00245 0.71 +1.1 47,413 + eptB LU632_RS00245 0.71 -0.4 47,414 - eptB LU632_RS00245 0.71 -0.2 47,414 - eptB LU632_RS00245 0.71 +0.5 47,443 + eptB LU632_RS00245 0.72 +0.2 47,517 + eptB LU632_RS00245 0.77 +1.0 47,518 - eptB LU632_RS00245 0.77 -0.6 47,531 - eptB LU632_RS00245 0.77 -1.0 47,575 - eptB LU632_RS00245 0.80 -0.1 47,644 - eptB LU632_RS00245 0.84 -0.0 47,706 + eptB LU632_RS00245 0.88 +0.3 47,710 + eptB LU632_RS00245 0.88 -0.2 47,711 - eptB LU632_RS00245 0.88 -0.4 47,805 + -0.1 47,806 - +0.2 47,806 - +0.0 47,806 - +0.8 47,824 + -0.0 47,825 - +0.2 47,826 + +0.0 47,827 - -0.7 47,833 - -0.4 47,833 - -2.1 47,947 + -0.5 48,064 - +0.9 48,064 - +0.4 48,164 - -0.8 48,216 + cirA LU632_RS00250 0.11 +0.4 48,216 + cirA LU632_RS00250 0.11 -0.5 48,307 + cirA LU632_RS00250 0.15 +0.6 48,342 + cirA LU632_RS00250 0.17 -0.3 48,343 - cirA LU632_RS00250 0.17 -0.8 48,343 - cirA LU632_RS00250 0.17 -0.4 48,347 - cirA LU632_RS00250 0.17 -1.4 48,348 + cirA LU632_RS00250 0.17 +0.6 48,349 - cirA LU632_RS00250 0.17 -0.2 48,432 + cirA LU632_RS00250 0.22 +0.6 48,432 + cirA LU632_RS00250 0.22 -0.2 48,432 + cirA LU632_RS00250 0.22 -0.3 48,432 + cirA LU632_RS00250 0.22 +0.5 48,433 - cirA LU632_RS00250 0.22 -0.1 48,433 - cirA LU632_RS00250 0.22 +1.9 48,591 + cirA LU632_RS00250 0.30 +0.2 48,591 + cirA LU632_RS00250 0.30 +0.2 48,652 + cirA LU632_RS00250 0.33 -0.1 48,801 + cirA LU632_RS00250 0.40 -1.1
Or see this region's nucleotide sequence