Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS26090

Experiment: MelonXylem

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLU632_RS26085 and LU632_RS26090 are separated by 62 nucleotidesLU632_RS26090 and LU632_RS26095 overlap by 4 nucleotidesLU632_RS26095 and LU632_RS26100 are separated by 7 nucleotidesLU632_RS26100 and LU632_RS26105 are separated by 16 nucleotides LU632_RS26085: LU632_RS26085 - site-specific DNA-methyltransferase, at 23,785 to 25,029 _RS26085 LU632_RS26090: LU632_RS26090 - DUF2514 domain-containing protein, at 25,092 to 25,613 _RS26090 LU632_RS26095: LU632_RS26095 - lysozyme, at 25,610 to 26,035 _RS26095 LU632_RS26100: LU632_RS26100 - phage holin family protein, at 26,043 to 26,345 _RS26100 LU632_RS26105: LU632_RS26105 - hypothetical protein, at 26,362 to 26,520 _RS26105 Position (kb) 25 26Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 24.150 kb on - strand, within LU632_RS26085at 24.177 kb on - strand, within LU632_RS26085at 24.177 kb on - strand, within LU632_RS26085at 24.215 kb on - strand, within LU632_RS26085at 24.215 kb on - strand, within LU632_RS26085at 24.270 kb on - strand, within LU632_RS26085at 24.294 kb on + strand, within LU632_RS26085at 24.295 kb on - strand, within LU632_RS26085at 24.296 kb on + strand, within LU632_RS26085at 24.296 kb on + strand, within LU632_RS26085at 24.296 kb on + strand, within LU632_RS26085at 24.296 kb on + strand, within LU632_RS26085at 24.296 kb on + strand, within LU632_RS26085at 24.296 kb on + strand, within LU632_RS26085at 24.296 kb on + strand, within LU632_RS26085at 24.296 kb on + strand, within LU632_RS26085at 24.296 kb on + strand, within LU632_RS26085at 24.296 kb on + strand, within LU632_RS26085at 24.297 kb on - strand, within LU632_RS26085at 24.297 kb on - strand, within LU632_RS26085at 24.297 kb on - strand, within LU632_RS26085at 24.297 kb on - strand, within LU632_RS26085at 24.297 kb on - strand, within LU632_RS26085at 24.297 kb on - strand, within LU632_RS26085at 24.297 kb on - strand, within LU632_RS26085at 24.297 kb on - strand, within LU632_RS26085at 24.297 kb on - strand, within LU632_RS26085at 24.297 kb on - strand, within LU632_RS26085at 24.338 kb on + strand, within LU632_RS26085at 24.338 kb on + strand, within LU632_RS26085at 24.338 kb on + strand, within LU632_RS26085at 24.338 kb on + strand, within LU632_RS26085at 24.339 kb on - strand, within LU632_RS26085at 24.339 kb on - strand, within LU632_RS26085at 24.339 kb on - strand, within LU632_RS26085at 24.394 kb on - strand, within LU632_RS26085at 24.415 kb on - strand, within LU632_RS26085at 24.415 kb on - strand, within LU632_RS26085at 24.434 kb on + strand, within LU632_RS26085at 24.434 kb on + strand, within LU632_RS26085at 24.435 kb on - strand, within LU632_RS26085at 24.456 kb on + strand, within LU632_RS26085at 24.456 kb on + strand, within LU632_RS26085at 24.456 kb on + strand, within LU632_RS26085at 24.456 kb on + strand, within LU632_RS26085at 24.456 kb on + strand, within LU632_RS26085at 24.456 kb on + strand, within LU632_RS26085at 24.456 kb on + strand, within LU632_RS26085at 24.457 kb on - strand, within LU632_RS26085at 24.457 kb on - strand, within LU632_RS26085at 24.457 kb on - strand, within LU632_RS26085at 24.457 kb on - strand, within LU632_RS26085at 24.457 kb on - strand, within LU632_RS26085at 24.546 kb on + strand, within LU632_RS26085at 24.718 kb on - strand, within LU632_RS26085at 24.753 kb on + strand, within LU632_RS26085at 24.753 kb on + strand, within LU632_RS26085at 24.754 kb on - strand, within LU632_RS26085at 24.754 kb on - strand, within LU632_RS26085at 24.767 kb on + strand, within LU632_RS26085at 24.767 kb on + strand, within LU632_RS26085at 24.767 kb on + strand, within LU632_RS26085at 24.767 kb on + strand, within LU632_RS26085at 24.767 kb on + strand, within LU632_RS26085at 24.768 kb on - strand, within LU632_RS26085at 25.005 kb on - strandat 25.080 kb on + strandat 25.363 kb on - strand, within LU632_RS26090at 25.508 kb on + strand, within LU632_RS26090at 25.508 kb on + strand, within LU632_RS26090at 25.508 kb on + strand, within LU632_RS26090at 25.509 kb on - strand, within LU632_RS26090at 25.509 kb on - strand, within LU632_RS26090at 25.509 kb on - strand, within LU632_RS26090at 25.509 kb on - strand, within LU632_RS26090at 25.509 kb on - strand, within LU632_RS26090at 25.523 kb on + strand, within LU632_RS26090at 25.523 kb on + strand, within LU632_RS26090at 25.616 kb on + strandat 25.617 kb on - strandat 25.625 kb on - strandat 25.716 kb on + strand, within LU632_RS26095at 25.716 kb on + strand, within LU632_RS26095at 25.717 kb on - strand, within LU632_RS26095at 25.747 kb on + strand, within LU632_RS26095at 25.748 kb on - strand, within LU632_RS26095at 25.748 kb on - strand, within LU632_RS26095at 25.748 kb on - strand, within LU632_RS26095at 25.748 kb on - strand, within LU632_RS26095at 25.762 kb on + strand, within LU632_RS26095at 25.839 kb on + strand, within LU632_RS26095at 25.900 kb on + strand, within LU632_RS26095at 25.901 kb on - strand, within LU632_RS26095at 25.901 kb on - strand, within LU632_RS26095at 25.903 kb on + strand, within LU632_RS26095at 25.903 kb on + strand, within LU632_RS26095at 25.903 kb on + strand, within LU632_RS26095at 25.904 kb on - strand, within LU632_RS26095at 25.904 kb on - strand, within LU632_RS26095at 25.904 kb on - strand, within LU632_RS26095at 25.904 kb on - strand, within LU632_RS26095at 25.920 kb on - strand, within LU632_RS26095at 25.971 kb on + strand, within LU632_RS26095at 25.972 kb on - strand, within LU632_RS26095at 25.972 kb on - strand, within LU632_RS26095at 26.044 kb on + strandat 26.048 kb on + strandat 26.048 kb on + strandat 26.048 kb on + strandat 26.048 kb on + strandat 26.048 kb on + strandat 26.048 kb on + strandat 26.048 kb on + strandat 26.049 kb on - strandat 26.049 kb on - strandat 26.049 kb on - strandat 26.049 kb on - strandat 26.049 kb on - strandat 26.049 kb on - strandat 26.049 kb on - strandat 26.049 kb on - strandat 26.049 kb on - strandat 26.097 kb on - strand, within LU632_RS26100at 26.097 kb on - strand, within LU632_RS26100at 26.308 kb on - strand, within LU632_RS26100at 26.367 kb on + strandat 26.367 kb on + strandat 26.525 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MelonXylem
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24,150 - LU632_RS26085 0.29 -0.1
24,177 - LU632_RS26085 0.31 -0.5
24,177 - LU632_RS26085 0.31 -0.1
24,215 - LU632_RS26085 0.35 +0.2
24,215 - LU632_RS26085 0.35 -0.7
24,270 - LU632_RS26085 0.39 -0.3
24,294 + LU632_RS26085 0.41 +1.2
24,295 - LU632_RS26085 0.41 -1.1
24,296 + LU632_RS26085 0.41 -0.2
24,296 + LU632_RS26085 0.41 +0.1
24,296 + LU632_RS26085 0.41 +0.6
24,296 + LU632_RS26085 0.41 +1.1
24,296 + LU632_RS26085 0.41 -0.0
24,296 + LU632_RS26085 0.41 +0.7
24,296 + LU632_RS26085 0.41 -0.8
24,296 + LU632_RS26085 0.41 -1.5
24,296 + LU632_RS26085 0.41 -0.2
24,296 + LU632_RS26085 0.41 +0.6
24,297 - LU632_RS26085 0.41 -0.3
24,297 - LU632_RS26085 0.41 -0.5
24,297 - LU632_RS26085 0.41 +0.2
24,297 - LU632_RS26085 0.41 -2.6
24,297 - LU632_RS26085 0.41 -0.3
24,297 - LU632_RS26085 0.41 +0.0
24,297 - LU632_RS26085 0.41 +1.2
24,297 - LU632_RS26085 0.41 -0.3
24,297 - LU632_RS26085 0.41 -0.5
24,297 - LU632_RS26085 0.41 -0.7
24,338 + LU632_RS26085 0.44 +0.5
24,338 + LU632_RS26085 0.44 -0.5
24,338 + LU632_RS26085 0.44 -0.3
24,338 + LU632_RS26085 0.44 +1.1
24,339 - LU632_RS26085 0.44 -0.4
24,339 - LU632_RS26085 0.44 -0.6
24,339 - LU632_RS26085 0.44 +1.6
24,394 - LU632_RS26085 0.49 +0.5
24,415 - LU632_RS26085 0.51 -0.7
24,415 - LU632_RS26085 0.51 +0.4
24,434 + LU632_RS26085 0.52 +1.3
24,434 + LU632_RS26085 0.52 -0.1
24,435 - LU632_RS26085 0.52 -2.8
24,456 + LU632_RS26085 0.54 +0.4
24,456 + LU632_RS26085 0.54 +1.1
24,456 + LU632_RS26085 0.54 -0.3
24,456 + LU632_RS26085 0.54 +0.6
24,456 + LU632_RS26085 0.54 +0.9
24,456 + LU632_RS26085 0.54 -0.5
24,456 + LU632_RS26085 0.54 +0.2
24,457 - LU632_RS26085 0.54 -3.2
24,457 - LU632_RS26085 0.54 +0.5
24,457 - LU632_RS26085 0.54 -0.4
24,457 - LU632_RS26085 0.54 -0.2
24,457 - LU632_RS26085 0.54 -2.8
24,546 + LU632_RS26085 0.61 +0.6
24,718 - LU632_RS26085 0.75 +0.0
24,753 + LU632_RS26085 0.78 -0.2
24,753 + LU632_RS26085 0.78 +0.0
24,754 - LU632_RS26085 0.78 +0.1
24,754 - LU632_RS26085 0.78 -0.2
24,767 + LU632_RS26085 0.79 -2.0
24,767 + LU632_RS26085 0.79 -0.3
24,767 + LU632_RS26085 0.79 +0.1
24,767 + LU632_RS26085 0.79 -1.8
24,767 + LU632_RS26085 0.79 +0.3
24,768 - LU632_RS26085 0.79 -0.2
25,005 - +0.1
25,080 + +1.0
25,363 - LU632_RS26090 0.52 -0.4
25,508 + LU632_RS26090 0.80 +0.4
25,508 + LU632_RS26090 0.80 -0.6
25,508 + LU632_RS26090 0.80 +0.5
25,509 - LU632_RS26090 0.80 -0.7
25,509 - LU632_RS26090 0.80 -0.8
25,509 - LU632_RS26090 0.80 -1.7
25,509 - LU632_RS26090 0.80 -0.8
25,509 - LU632_RS26090 0.80 -0.7
25,523 + LU632_RS26090 0.83 +0.2
25,523 + LU632_RS26090 0.83 -1.8
25,616 + -0.2
25,617 - -0.5
25,625 - -0.0
25,716 + LU632_RS26095 0.25 -0.1
25,716 + LU632_RS26095 0.25 -0.1
25,717 - LU632_RS26095 0.25 -0.2
25,747 + LU632_RS26095 0.32 -0.1
25,748 - LU632_RS26095 0.32 -1.1
25,748 - LU632_RS26095 0.32 -1.1
25,748 - LU632_RS26095 0.32 -1.0
25,748 - LU632_RS26095 0.32 -0.0
25,762 + LU632_RS26095 0.36 +0.1
25,839 + LU632_RS26095 0.54 -0.7
25,900 + LU632_RS26095 0.68 +0.1
25,901 - LU632_RS26095 0.68 -0.6
25,901 - LU632_RS26095 0.68 +0.6
25,903 + LU632_RS26095 0.69 -0.7
25,903 + LU632_RS26095 0.69 +0.1
25,903 + LU632_RS26095 0.69 -0.1
25,904 - LU632_RS26095 0.69 -0.5
25,904 - LU632_RS26095 0.69 -0.4
25,904 - LU632_RS26095 0.69 +0.0
25,904 - LU632_RS26095 0.69 -0.6
25,920 - LU632_RS26095 0.73 -0.2
25,971 + LU632_RS26095 0.85 -0.4
25,972 - LU632_RS26095 0.85 -0.8
25,972 - LU632_RS26095 0.85 -0.2
26,044 + -0.8
26,048 + -0.4
26,048 + -0.3
26,048 + +0.8
26,048 + -0.2
26,048 + -0.1
26,048 + +0.6
26,048 + -0.1
26,049 - +0.8
26,049 - -0.2
26,049 - -0.7
26,049 - +0.1
26,049 - +0.8
26,049 - -1.8
26,049 - -0.2
26,049 - +0.5
26,049 - +0.3
26,097 - LU632_RS26100 0.18 -1.0
26,097 - LU632_RS26100 0.18 -0.4
26,308 - LU632_RS26100 0.87 +0.4
26,367 + -0.0
26,367 + +0.0
26,525 + +2.9

Or see this region's nucleotide sequence