Experiment: MelonXylem
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS25545 and LU632_RS25550 are separated by 194 nucleotides LU632_RS25550 and LU632_RS25555 are separated by 3 nucleotides LU632_RS25555 and LU632_RS25560 are separated by 339 nucleotides LU632_RS25560 and LU632_RS25565 overlap by 4 nucleotides
LU632_RS25545: LU632_RS25545 - helix-turn-helix domain-containing protein, at 40,453 to 40,623
_RS25545
LU632_RS25550: LU632_RS25550 - Tn3 family transposase, at 40,818 to 41,318
_RS25550
LU632_RS25555: LU632_RS25555 - IS6 family transposase, at 41,322 to 41,429
_RS25555
LU632_RS25560: LU632_RS25560 - AAA family ATPase, at 41,769 to 42,395
_RS25560
LU632_RS25565: LU632_RS25565 - hypothetical protein, at 42,392 to 42,694
_RS25565
Position (kb) 41
42 Strain fitness (log2 ratio) -2
-1
0
1
2 at 40.326 kb on + strand at 40.326 kb on + strand at 40.354 kb on + strand at 40.372 kb on + strand at 40.373 kb on - strand at 40.455 kb on - strand at 40.461 kb on + strand at 40.470 kb on - strand, within LU632_RS25545 at 40.494 kb on + strand, within LU632_RS25545 at 40.665 kb on + strand at 40.674 kb on + strand at 40.674 kb on + strand at 40.674 kb on + strand at 40.675 kb on - strand at 40.675 kb on - strand at 40.675 kb on - strand at 40.675 kb on - strand at 40.675 kb on - strand at 40.675 kb on - strand at 40.675 kb on - strand at 40.675 kb on - strand at 40.696 kb on + strand at 40.696 kb on + strand at 40.696 kb on + strand at 40.697 kb on - strand at 40.713 kb on + strand at 40.713 kb on + strand at 40.719 kb on + strand at 40.719 kb on + strand at 40.719 kb on + strand at 40.720 kb on - strand at 40.730 kb on + strand at 40.760 kb on + strand at 40.761 kb on - strand at 40.768 kb on + strand at 40.768 kb on + strand at 40.769 kb on - strand at 40.769 kb on - strand at 40.782 kb on - strand at 40.852 kb on - strand at 40.901 kb on - strand, within LU632_RS25550 at 40.912 kb on - strand, within LU632_RS25550 at 40.912 kb on - strand, within LU632_RS25550 at 40.913 kb on + strand, within LU632_RS25550 at 40.913 kb on + strand, within LU632_RS25550 at 40.914 kb on - strand, within LU632_RS25550 at 40.914 kb on - strand, within LU632_RS25550 at 40.920 kb on - strand, within LU632_RS25550 at 40.920 kb on - strand, within LU632_RS25550 at 40.920 kb on - strand, within LU632_RS25550 at 40.920 kb on - strand, within LU632_RS25550 at 40.920 kb on - strand, within LU632_RS25550 at 40.920 kb on - strand, within LU632_RS25550 at 40.922 kb on - strand, within LU632_RS25550 at 40.922 kb on - strand, within LU632_RS25550 at 41.204 kb on - strand, within LU632_RS25550 at 41.204 kb on - strand, within LU632_RS25550 at 41.374 kb on - strand, within LU632_RS25555 at 41.428 kb on - strand at 41.454 kb on - strand at 41.627 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction MelonXylem remove 40,326 + -0.0 40,326 + +0.1 40,354 + -0.3 40,372 + +0.9 40,373 - +0.7 40,455 - +1.1 40,461 + +0.4 40,470 - LU632_RS25545 0.10 -0.2 40,494 + LU632_RS25545 0.24 -0.7 40,665 + +0.1 40,674 + +0.4 40,674 + +0.1 40,674 + +0.7 40,675 - +0.4 40,675 - +0.9 40,675 - -0.2 40,675 - +0.4 40,675 - -0.2 40,675 - -0.1 40,675 - -0.2 40,675 - -0.4 40,696 + +1.0 40,696 + -0.0 40,696 + +1.1 40,697 - -0.4 40,713 + -0.3 40,713 + +1.0 40,719 + +0.7 40,719 + +2.4 40,719 + +0.1 40,720 - +0.7 40,730 + -1.9 40,760 + +1.7 40,761 - +0.8 40,768 + -0.5 40,768 + -0.2 40,769 - +0.4 40,769 - +0.4 40,782 - -1.9 40,852 - -0.1 40,901 - LU632_RS25550 0.17 +0.4 40,912 - LU632_RS25550 0.19 -0.8 40,912 - LU632_RS25550 0.19 +0.1 40,913 + LU632_RS25550 0.19 +0.8 40,913 + LU632_RS25550 0.19 -0.5 40,914 - LU632_RS25550 0.19 -0.4 40,914 - LU632_RS25550 0.19 +0.1 40,920 - LU632_RS25550 0.20 -1.4 40,920 - LU632_RS25550 0.20 -0.2 40,920 - LU632_RS25550 0.20 +0.4 40,920 - LU632_RS25550 0.20 +0.1 40,920 - LU632_RS25550 0.20 +0.2 40,920 - LU632_RS25550 0.20 +0.4 40,922 - LU632_RS25550 0.21 +0.6 40,922 - LU632_RS25550 0.21 -0.2 41,204 - LU632_RS25550 0.77 +0.6 41,204 - LU632_RS25550 0.77 +0.2 41,374 - LU632_RS25555 0.48 -0.8 41,428 - -0.2 41,454 - -0.3 41,627 + +0.6
Or see this region's nucleotide sequence