Experiment: MelonXylem
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS25535 and LU632_RS25540 are separated by 48 nucleotides LU632_RS25540 and LU632_RS25545 are separated by 135 nucleotides LU632_RS25545 and LU632_RS25550 are separated by 194 nucleotides
LU632_RS25535: LU632_RS25535 - MFS transporter, at 38,545 to 39,690
_RS25535
LU632_RS25540: LU632_RS25540 - DUF1349 domain-containing protein, at 39,739 to 40,317
_RS25540
LU632_RS25545: LU632_RS25545 - helix-turn-helix domain-containing protein, at 40,453 to 40,623
_RS25545
LU632_RS25550: LU632_RS25550 - Tn3 family transposase, at 40,818 to 41,318
_RS25550
Position (kb) 39
40
41 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 38.750 kb on + strand, within LU632_RS25535 at 38.847 kb on - strand, within LU632_RS25535 at 39.008 kb on + strand, within LU632_RS25535 at 39.008 kb on + strand, within LU632_RS25535 at 39.008 kb on + strand, within LU632_RS25535 at 39.009 kb on - strand, within LU632_RS25535 at 39.009 kb on - strand, within LU632_RS25535 at 39.009 kb on - strand, within LU632_RS25535 at 39.009 kb on - strand, within LU632_RS25535 at 39.009 kb on - strand, within LU632_RS25535 at 39.017 kb on + strand, within LU632_RS25535 at 39.017 kb on + strand, within LU632_RS25535 at 39.017 kb on + strand, within LU632_RS25535 at 39.020 kb on + strand, within LU632_RS25535 at 39.026 kb on - strand, within LU632_RS25535 at 39.091 kb on - strand, within LU632_RS25535 at 39.159 kb on - strand, within LU632_RS25535 at 39.159 kb on - strand, within LU632_RS25535 at 39.163 kb on - strand, within LU632_RS25535 at 39.163 kb on - strand, within LU632_RS25535 at 39.163 kb on - strand, within LU632_RS25535 at 39.194 kb on - strand, within LU632_RS25535 at 39.210 kb on + strand, within LU632_RS25535 at 39.210 kb on + strand, within LU632_RS25535 at 39.210 kb on + strand, within LU632_RS25535 at 39.210 kb on + strand, within LU632_RS25535 at 39.211 kb on - strand, within LU632_RS25535 at 39.211 kb on - strand, within LU632_RS25535 at 39.281 kb on - strand, within LU632_RS25535 at 39.281 kb on - strand, within LU632_RS25535 at 39.283 kb on - strand, within LU632_RS25535 at 39.283 kb on - strand, within LU632_RS25535 at 39.283 kb on - strand, within LU632_RS25535 at 39.283 kb on - strand, within LU632_RS25535 at 39.300 kb on + strand, within LU632_RS25535 at 39.337 kb on - strand, within LU632_RS25535 at 39.337 kb on - strand, within LU632_RS25535 at 39.468 kb on + strand, within LU632_RS25535 at 39.468 kb on + strand, within LU632_RS25535 at 39.469 kb on - strand, within LU632_RS25535 at 39.469 kb on - strand, within LU632_RS25535 at 39.607 kb on + strand at 39.607 kb on + strand at 39.664 kb on + strand at 39.665 kb on - strand at 39.665 kb on - strand at 39.665 kb on - strand at 39.670 kb on - strand at 39.670 kb on - strand at 39.675 kb on + strand at 39.676 kb on - strand at 39.677 kb on + strand at 39.701 kb on + strand at 39.701 kb on + strand at 39.702 kb on - strand at 39.702 kb on - strand at 39.702 kb on - strand at 39.702 kb on - strand at 39.702 kb on - strand at 39.702 kb on - strand at 39.702 kb on - strand at 39.703 kb on + strand at 39.703 kb on - strand at 39.704 kb on - strand at 39.704 kb on - strand at 39.704 kb on - strand at 39.704 kb on - strand at 39.719 kb on + strand at 39.719 kb on + strand at 39.720 kb on - strand at 39.720 kb on - strand at 39.736 kb on + strand at 39.737 kb on - strand at 39.737 kb on - strand at 39.737 kb on - strand at 39.809 kb on + strand, within LU632_RS25540 at 39.809 kb on - strand, within LU632_RS25540 at 39.810 kb on - strand, within LU632_RS25540 at 39.810 kb on - strand, within LU632_RS25540 at 39.810 kb on - strand, within LU632_RS25540 at 40.040 kb on + strand, within LU632_RS25540 at 40.312 kb on - strand at 40.315 kb on + strand at 40.321 kb on + strand at 40.326 kb on + strand at 40.326 kb on + strand at 40.354 kb on + strand at 40.372 kb on + strand at 40.373 kb on - strand at 40.455 kb on - strand at 40.461 kb on + strand at 40.470 kb on - strand, within LU632_RS25545 at 40.494 kb on + strand, within LU632_RS25545 at 40.665 kb on + strand at 40.674 kb on + strand at 40.674 kb on + strand at 40.674 kb on + strand at 40.675 kb on - strand at 40.675 kb on - strand at 40.675 kb on - strand at 40.675 kb on - strand at 40.675 kb on - strand at 40.675 kb on - strand at 40.675 kb on - strand at 40.675 kb on - strand at 40.696 kb on + strand at 40.696 kb on + strand at 40.696 kb on + strand at 40.697 kb on - strand at 40.713 kb on + strand at 40.713 kb on + strand at 40.719 kb on + strand at 40.719 kb on + strand at 40.719 kb on + strand at 40.720 kb on - strand at 40.730 kb on + strand at 40.760 kb on + strand at 40.761 kb on - strand at 40.768 kb on + strand at 40.768 kb on + strand at 40.769 kb on - strand at 40.769 kb on - strand at 40.782 kb on - strand at 40.852 kb on - strand at 40.901 kb on - strand, within LU632_RS25550 at 40.912 kb on - strand, within LU632_RS25550 at 40.912 kb on - strand, within LU632_RS25550 at 40.913 kb on + strand, within LU632_RS25550 at 40.913 kb on + strand, within LU632_RS25550 at 40.914 kb on - strand, within LU632_RS25550 at 40.914 kb on - strand, within LU632_RS25550 at 40.920 kb on - strand, within LU632_RS25550 at 40.920 kb on - strand, within LU632_RS25550 at 40.920 kb on - strand, within LU632_RS25550 at 40.920 kb on - strand, within LU632_RS25550 at 40.920 kb on - strand, within LU632_RS25550 at 40.920 kb on - strand, within LU632_RS25550 at 40.922 kb on - strand, within LU632_RS25550 at 40.922 kb on - strand, within LU632_RS25550 at 41.204 kb on - strand, within LU632_RS25550 at 41.204 kb on - strand, within LU632_RS25550
Per-strain Table
Position Strand Gene LocusTag Fraction MelonXylem remove 38,750 + LU632_RS25535 0.18 -0.6 38,847 - LU632_RS25535 0.26 -0.2 39,008 + LU632_RS25535 0.40 -1.2 39,008 + LU632_RS25535 0.40 +0.5 39,008 + LU632_RS25535 0.40 -0.4 39,009 - LU632_RS25535 0.40 +1.0 39,009 - LU632_RS25535 0.40 -0.4 39,009 - LU632_RS25535 0.40 -0.9 39,009 - LU632_RS25535 0.40 +0.6 39,009 - LU632_RS25535 0.40 -0.0 39,017 + LU632_RS25535 0.41 +1.4 39,017 + LU632_RS25535 0.41 -0.2 39,017 + LU632_RS25535 0.41 -0.4 39,020 + LU632_RS25535 0.41 -0.0 39,026 - LU632_RS25535 0.42 -0.2 39,091 - LU632_RS25535 0.48 -0.1 39,159 - LU632_RS25535 0.54 +0.1 39,159 - LU632_RS25535 0.54 +0.0 39,163 - LU632_RS25535 0.54 +1.4 39,163 - LU632_RS25535 0.54 +3.1 39,163 - LU632_RS25535 0.54 +0.8 39,194 - LU632_RS25535 0.57 -0.5 39,210 + LU632_RS25535 0.58 -1.2 39,210 + LU632_RS25535 0.58 +0.9 39,210 + LU632_RS25535 0.58 +0.3 39,210 + LU632_RS25535 0.58 +0.1 39,211 - LU632_RS25535 0.58 -0.1 39,211 - LU632_RS25535 0.58 -1.4 39,281 - LU632_RS25535 0.64 -1.9 39,281 - LU632_RS25535 0.64 -0.2 39,283 - LU632_RS25535 0.64 +2.2 39,283 - LU632_RS25535 0.64 +0.4 39,283 - LU632_RS25535 0.64 +1.4 39,283 - LU632_RS25535 0.64 -0.1 39,300 + LU632_RS25535 0.66 +0.6 39,337 - LU632_RS25535 0.69 +0.1 39,337 - LU632_RS25535 0.69 -0.4 39,468 + LU632_RS25535 0.81 +0.4 39,468 + LU632_RS25535 0.81 +0.1 39,469 - LU632_RS25535 0.81 +0.5 39,469 - LU632_RS25535 0.81 -0.3 39,607 + -1.4 39,607 + +2.1 39,664 + -0.4 39,665 - -0.4 39,665 - +1.9 39,665 - +0.4 39,670 - +1.8 39,670 - -0.6 39,675 + -0.6 39,676 - +0.0 39,677 + -0.8 39,701 + +0.2 39,701 + +0.8 39,702 - -0.4 39,702 - -0.2 39,702 - -0.0 39,702 - +0.3 39,702 - +0.4 39,702 - +0.3 39,702 - +0.7 39,703 + +0.0 39,703 - -0.0 39,704 - -0.1 39,704 - -0.2 39,704 - +0.8 39,704 - +0.1 39,719 + -0.1 39,719 + -0.4 39,720 - +0.8 39,720 - -0.5 39,736 + -0.6 39,737 - -0.2 39,737 - +0.5 39,737 - +0.4 39,809 + LU632_RS25540 0.12 -0.1 39,809 - LU632_RS25540 0.12 -1.1 39,810 - LU632_RS25540 0.12 -0.8 39,810 - LU632_RS25540 0.12 +0.2 39,810 - LU632_RS25540 0.12 +0.3 40,040 + LU632_RS25540 0.52 -0.0 40,312 - +0.3 40,315 + +0.1 40,321 + -0.7 40,326 + -0.0 40,326 + +0.1 40,354 + -0.3 40,372 + +0.9 40,373 - +0.7 40,455 - +1.1 40,461 + +0.4 40,470 - LU632_RS25545 0.10 -0.2 40,494 + LU632_RS25545 0.24 -0.7 40,665 + +0.1 40,674 + +0.4 40,674 + +0.1 40,674 + +0.7 40,675 - +0.4 40,675 - +0.9 40,675 - -0.2 40,675 - +0.4 40,675 - -0.2 40,675 - -0.1 40,675 - -0.2 40,675 - -0.4 40,696 + +1.0 40,696 + -0.0 40,696 + +1.1 40,697 - -0.4 40,713 + -0.3 40,713 + +1.0 40,719 + +0.7 40,719 + +2.4 40,719 + +0.1 40,720 - +0.7 40,730 + -1.9 40,760 + +1.7 40,761 - +0.8 40,768 + -0.5 40,768 + -0.2 40,769 - +0.4 40,769 - +0.4 40,782 - -1.9 40,852 - -0.1 40,901 - LU632_RS25550 0.17 +0.4 40,912 - LU632_RS25550 0.19 -0.8 40,912 - LU632_RS25550 0.19 +0.1 40,913 + LU632_RS25550 0.19 +0.8 40,913 + LU632_RS25550 0.19 -0.5 40,914 - LU632_RS25550 0.19 -0.4 40,914 - LU632_RS25550 0.19 +0.1 40,920 - LU632_RS25550 0.20 -1.4 40,920 - LU632_RS25550 0.20 -0.2 40,920 - LU632_RS25550 0.20 +0.4 40,920 - LU632_RS25550 0.20 +0.1 40,920 - LU632_RS25550 0.20 +0.2 40,920 - LU632_RS25550 0.20 +0.4 40,922 - LU632_RS25550 0.21 +0.6 40,922 - LU632_RS25550 0.21 -0.2 41,204 - LU632_RS25550 0.77 +0.6 41,204 - LU632_RS25550 0.77 +0.2
Or see this region's nucleotide sequence