Experiment: MelonXylem
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS25525 and LU632_RS25530 overlap by 4 nucleotides LU632_RS25530 and LU632_RS25535 are separated by 62 nucleotides LU632_RS25535 and LU632_RS25540 are separated by 48 nucleotides LU632_RS25540 and LU632_RS25545 are separated by 135 nucleotides
LU632_RS25525: LU632_RS25525 - alcohol dehydrogenase catalytic domain-containing protein, at 36,774 to 37,847
_RS25525
LU632_RS25530: LU632_RS25530 - HAD family phosphatase, at 37,844 to 38,482
_RS25530
LU632_RS25535: LU632_RS25535 - MFS transporter, at 38,545 to 39,690
_RS25535
LU632_RS25540: LU632_RS25540 - DUF1349 domain-containing protein, at 39,739 to 40,317
_RS25540
LU632_RS25545: LU632_RS25545 - helix-turn-helix domain-containing protein, at 40,453 to 40,623
_RS25545
Position (kb) 38
39
40 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 37.556 kb on + strand, within LU632_RS25525 at 37.556 kb on + strand, within LU632_RS25525 at 37.557 kb on - strand, within LU632_RS25525 at 37.599 kb on - strand, within LU632_RS25525 at 37.612 kb on + strand, within LU632_RS25525 at 37.638 kb on - strand, within LU632_RS25525 at 37.657 kb on - strand, within LU632_RS25525 at 37.657 kb on - strand, within LU632_RS25525 at 37.664 kb on - strand, within LU632_RS25525 at 37.814 kb on + strand at 37.814 kb on + strand at 37.843 kb on + strand at 37.843 kb on + strand at 37.843 kb on + strand at 37.843 kb on + strand at 37.844 kb on - strand at 37.844 kb on - strand at 37.861 kb on + strand at 37.951 kb on - strand, within LU632_RS25530 at 37.975 kb on + strand, within LU632_RS25530 at 37.975 kb on + strand, within LU632_RS25530 at 37.975 kb on + strand, within LU632_RS25530 at 38.128 kb on + strand, within LU632_RS25530 at 38.129 kb on - strand, within LU632_RS25530 at 38.262 kb on - strand, within LU632_RS25530 at 38.262 kb on - strand, within LU632_RS25530 at 38.265 kb on + strand, within LU632_RS25530 at 38.266 kb on - strand, within LU632_RS25530 at 38.369 kb on + strand, within LU632_RS25530 at 38.369 kb on + strand, within LU632_RS25530 at 38.369 kb on + strand, within LU632_RS25530 at 38.369 kb on + strand, within LU632_RS25530 at 38.370 kb on - strand, within LU632_RS25530 at 38.370 kb on - strand, within LU632_RS25530 at 38.370 kb on - strand, within LU632_RS25530 at 38.370 kb on - strand, within LU632_RS25530 at 38.370 kb on - strand, within LU632_RS25530 at 38.370 kb on - strand, within LU632_RS25530 at 38.370 kb on - strand, within LU632_RS25530 at 38.490 kb on + strand at 38.520 kb on + strand at 38.521 kb on - strand at 38.521 kb on - strand at 38.523 kb on - strand at 38.538 kb on - strand at 38.541 kb on + strand at 38.541 kb on + strand at 38.585 kb on + strand at 38.585 kb on + strand at 38.586 kb on - strand at 38.588 kb on + strand at 38.589 kb on - strand at 38.589 kb on - strand at 38.589 kb on - strand at 38.645 kb on + strand at 38.646 kb on - strand at 38.672 kb on + strand, within LU632_RS25535 at 38.672 kb on + strand, within LU632_RS25535 at 38.750 kb on + strand, within LU632_RS25535 at 38.847 kb on - strand, within LU632_RS25535 at 39.008 kb on + strand, within LU632_RS25535 at 39.008 kb on + strand, within LU632_RS25535 at 39.008 kb on + strand, within LU632_RS25535 at 39.009 kb on - strand, within LU632_RS25535 at 39.009 kb on - strand, within LU632_RS25535 at 39.009 kb on - strand, within LU632_RS25535 at 39.009 kb on - strand, within LU632_RS25535 at 39.009 kb on - strand, within LU632_RS25535 at 39.017 kb on + strand, within LU632_RS25535 at 39.017 kb on + strand, within LU632_RS25535 at 39.017 kb on + strand, within LU632_RS25535 at 39.020 kb on + strand, within LU632_RS25535 at 39.026 kb on - strand, within LU632_RS25535 at 39.091 kb on - strand, within LU632_RS25535 at 39.159 kb on - strand, within LU632_RS25535 at 39.159 kb on - strand, within LU632_RS25535 at 39.163 kb on - strand, within LU632_RS25535 at 39.163 kb on - strand, within LU632_RS25535 at 39.163 kb on - strand, within LU632_RS25535 at 39.194 kb on - strand, within LU632_RS25535 at 39.210 kb on + strand, within LU632_RS25535 at 39.210 kb on + strand, within LU632_RS25535 at 39.210 kb on + strand, within LU632_RS25535 at 39.210 kb on + strand, within LU632_RS25535 at 39.211 kb on - strand, within LU632_RS25535 at 39.211 kb on - strand, within LU632_RS25535 at 39.281 kb on - strand, within LU632_RS25535 at 39.281 kb on - strand, within LU632_RS25535 at 39.283 kb on - strand, within LU632_RS25535 at 39.283 kb on - strand, within LU632_RS25535 at 39.283 kb on - strand, within LU632_RS25535 at 39.283 kb on - strand, within LU632_RS25535 at 39.300 kb on + strand, within LU632_RS25535 at 39.337 kb on - strand, within LU632_RS25535 at 39.337 kb on - strand, within LU632_RS25535 at 39.468 kb on + strand, within LU632_RS25535 at 39.468 kb on + strand, within LU632_RS25535 at 39.469 kb on - strand, within LU632_RS25535 at 39.469 kb on - strand, within LU632_RS25535 at 39.607 kb on + strand at 39.607 kb on + strand at 39.664 kb on + strand at 39.665 kb on - strand at 39.665 kb on - strand at 39.665 kb on - strand at 39.670 kb on - strand at 39.670 kb on - strand at 39.675 kb on + strand at 39.676 kb on - strand at 39.677 kb on + strand at 39.701 kb on + strand at 39.701 kb on + strand at 39.702 kb on - strand at 39.702 kb on - strand at 39.702 kb on - strand at 39.702 kb on - strand at 39.702 kb on - strand at 39.702 kb on - strand at 39.702 kb on - strand at 39.703 kb on + strand at 39.703 kb on - strand at 39.704 kb on - strand at 39.704 kb on - strand at 39.704 kb on - strand at 39.704 kb on - strand at 39.719 kb on + strand at 39.719 kb on + strand at 39.720 kb on - strand at 39.720 kb on - strand at 39.736 kb on + strand at 39.737 kb on - strand at 39.737 kb on - strand at 39.737 kb on - strand at 39.809 kb on + strand, within LU632_RS25540 at 39.809 kb on - strand, within LU632_RS25540 at 39.810 kb on - strand, within LU632_RS25540 at 39.810 kb on - strand, within LU632_RS25540 at 39.810 kb on - strand, within LU632_RS25540 at 40.040 kb on + strand, within LU632_RS25540 at 40.312 kb on - strand at 40.315 kb on + strand at 40.321 kb on + strand at 40.326 kb on + strand at 40.326 kb on + strand at 40.354 kb on + strand at 40.372 kb on + strand at 40.373 kb on - strand at 40.455 kb on - strand at 40.461 kb on + strand at 40.470 kb on - strand, within LU632_RS25545 at 40.494 kb on + strand, within LU632_RS25545 at 40.665 kb on + strand at 40.674 kb on + strand at 40.674 kb on + strand at 40.674 kb on + strand at 40.675 kb on - strand at 40.675 kb on - strand at 40.675 kb on - strand at 40.675 kb on - strand at 40.675 kb on - strand at 40.675 kb on - strand at 40.675 kb on - strand at 40.675 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MelonXylem remove 37,556 + LU632_RS25525 0.73 -0.3 37,556 + LU632_RS25525 0.73 +0.6 37,557 - LU632_RS25525 0.73 -0.4 37,599 - LU632_RS25525 0.77 -0.4 37,612 + LU632_RS25525 0.78 +0.8 37,638 - LU632_RS25525 0.80 -1.6 37,657 - LU632_RS25525 0.82 +0.2 37,657 - LU632_RS25525 0.82 -0.1 37,664 - LU632_RS25525 0.83 -0.6 37,814 + -0.6 37,814 + -0.4 37,843 + +0.1 37,843 + +0.1 37,843 + +0.9 37,843 + -0.8 37,844 - -0.4 37,844 - -0.2 37,861 + -0.6 37,951 - LU632_RS25530 0.17 +0.6 37,975 + LU632_RS25530 0.21 +0.8 37,975 + LU632_RS25530 0.21 -0.2 37,975 + LU632_RS25530 0.21 +0.7 38,128 + LU632_RS25530 0.44 -1.8 38,129 - LU632_RS25530 0.45 -0.8 38,262 - LU632_RS25530 0.65 -1.4 38,262 - LU632_RS25530 0.65 +0.4 38,265 + LU632_RS25530 0.66 +1.4 38,266 - LU632_RS25530 0.66 +0.1 38,369 + LU632_RS25530 0.82 -0.2 38,369 + LU632_RS25530 0.82 +0.4 38,369 + LU632_RS25530 0.82 -0.2 38,369 + LU632_RS25530 0.82 -0.9 38,370 - LU632_RS25530 0.82 -1.8 38,370 - LU632_RS25530 0.82 +0.2 38,370 - LU632_RS25530 0.82 -0.2 38,370 - LU632_RS25530 0.82 -0.2 38,370 - LU632_RS25530 0.82 +0.9 38,370 - LU632_RS25530 0.82 +1.2 38,370 - LU632_RS25530 0.82 +0.7 38,490 + +0.0 38,520 + +0.1 38,521 - -0.6 38,521 - -0.9 38,523 - +0.8 38,538 - +0.0 38,541 + -0.4 38,541 + +4.0 38,585 + +0.7 38,585 + -0.4 38,586 - -1.2 38,588 + -0.3 38,589 - +0.6 38,589 - -0.4 38,589 - -0.0 38,645 + -0.4 38,646 - -0.0 38,672 + LU632_RS25535 0.11 +0.3 38,672 + LU632_RS25535 0.11 -0.7 38,750 + LU632_RS25535 0.18 -0.6 38,847 - LU632_RS25535 0.26 -0.2 39,008 + LU632_RS25535 0.40 -1.2 39,008 + LU632_RS25535 0.40 +0.5 39,008 + LU632_RS25535 0.40 -0.4 39,009 - LU632_RS25535 0.40 +1.0 39,009 - LU632_RS25535 0.40 -0.4 39,009 - LU632_RS25535 0.40 -0.9 39,009 - LU632_RS25535 0.40 +0.6 39,009 - LU632_RS25535 0.40 -0.0 39,017 + LU632_RS25535 0.41 +1.4 39,017 + LU632_RS25535 0.41 -0.2 39,017 + LU632_RS25535 0.41 -0.4 39,020 + LU632_RS25535 0.41 -0.0 39,026 - LU632_RS25535 0.42 -0.2 39,091 - LU632_RS25535 0.48 -0.1 39,159 - LU632_RS25535 0.54 +0.1 39,159 - LU632_RS25535 0.54 +0.0 39,163 - LU632_RS25535 0.54 +1.4 39,163 - LU632_RS25535 0.54 +3.1 39,163 - LU632_RS25535 0.54 +0.8 39,194 - LU632_RS25535 0.57 -0.5 39,210 + LU632_RS25535 0.58 -1.2 39,210 + LU632_RS25535 0.58 +0.9 39,210 + LU632_RS25535 0.58 +0.3 39,210 + LU632_RS25535 0.58 +0.1 39,211 - LU632_RS25535 0.58 -0.1 39,211 - LU632_RS25535 0.58 -1.4 39,281 - LU632_RS25535 0.64 -1.9 39,281 - LU632_RS25535 0.64 -0.2 39,283 - LU632_RS25535 0.64 +2.2 39,283 - LU632_RS25535 0.64 +0.4 39,283 - LU632_RS25535 0.64 +1.4 39,283 - LU632_RS25535 0.64 -0.1 39,300 + LU632_RS25535 0.66 +0.6 39,337 - LU632_RS25535 0.69 +0.1 39,337 - LU632_RS25535 0.69 -0.4 39,468 + LU632_RS25535 0.81 +0.4 39,468 + LU632_RS25535 0.81 +0.1 39,469 - LU632_RS25535 0.81 +0.5 39,469 - LU632_RS25535 0.81 -0.3 39,607 + -1.4 39,607 + +2.1 39,664 + -0.4 39,665 - -0.4 39,665 - +1.9 39,665 - +0.4 39,670 - +1.8 39,670 - -0.6 39,675 + -0.6 39,676 - +0.0 39,677 + -0.8 39,701 + +0.2 39,701 + +0.8 39,702 - -0.4 39,702 - -0.2 39,702 - -0.0 39,702 - +0.3 39,702 - +0.4 39,702 - +0.3 39,702 - +0.7 39,703 + +0.0 39,703 - -0.0 39,704 - -0.1 39,704 - -0.2 39,704 - +0.8 39,704 - +0.1 39,719 + -0.1 39,719 + -0.4 39,720 - +0.8 39,720 - -0.5 39,736 + -0.6 39,737 - -0.2 39,737 - +0.5 39,737 - +0.4 39,809 + LU632_RS25540 0.12 -0.1 39,809 - LU632_RS25540 0.12 -1.1 39,810 - LU632_RS25540 0.12 -0.8 39,810 - LU632_RS25540 0.12 +0.2 39,810 - LU632_RS25540 0.12 +0.3 40,040 + LU632_RS25540 0.52 -0.0 40,312 - +0.3 40,315 + +0.1 40,321 + -0.7 40,326 + -0.0 40,326 + +0.1 40,354 + -0.3 40,372 + +0.9 40,373 - +0.7 40,455 - +1.1 40,461 + +0.4 40,470 - LU632_RS25545 0.10 -0.2 40,494 + LU632_RS25545 0.24 -0.7 40,665 + +0.1 40,674 + +0.4 40,674 + +0.1 40,674 + +0.7 40,675 - +0.4 40,675 - +0.9 40,675 - -0.2 40,675 - +0.4 40,675 - -0.2 40,675 - -0.1 40,675 - -0.2 40,675 - -0.4
Or see this region's nucleotide sequence