Experiment: MelonXylem
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS25445 and LU632_RS25450 are separated by 1 nucleotides LU632_RS25450 and LU632_RS25455 are separated by 278 nucleotides LU632_RS25455 and LU632_RS25460 are separated by 173 nucleotides
LU632_RS25445: LU632_RS25445 - relaxase/mobilization nuclease domain-containing protein, at 24,220 to 26,151
_RS25445
LU632_RS25450: LU632_RS25450 - mobilization protein, at 26,153 to 26,497
_RS25450
LU632_RS25455: LU632_RS25455 - molybdopterin-guanine dinucleotide biosynthesis protein MobC, at 26,776 to 27,087
_RS25455
LU632_RS25460: LU632_RS25460 - DUF945 domain-containing protein, at 27,261 to 28,094
_RS25460
Position (kb) 26
27 Strain fitness (log2 ratio) -1
0
1
2
3 at 25.188 kb on + strand, within LU632_RS25445 at 25.361 kb on + strand, within LU632_RS25445 at 25.362 kb on - strand, within LU632_RS25445 at 25.362 kb on - strand, within LU632_RS25445 at 25.362 kb on - strand, within LU632_RS25445 at 25.373 kb on - strand, within LU632_RS25445 at 25.480 kb on - strand, within LU632_RS25445 at 25.558 kb on + strand, within LU632_RS25445 at 25.604 kb on + strand, within LU632_RS25445 at 25.605 kb on - strand, within LU632_RS25445 at 25.605 kb on - strand, within LU632_RS25445 at 25.623 kb on - strand, within LU632_RS25445 at 25.697 kb on + strand, within LU632_RS25445 at 25.697 kb on + strand, within LU632_RS25445 at 25.697 kb on + strand, within LU632_RS25445 at 25.697 kb on + strand, within LU632_RS25445 at 25.698 kb on - strand, within LU632_RS25445 at 25.698 kb on - strand, within LU632_RS25445 at 25.726 kb on - strand, within LU632_RS25445 at 25.802 kb on + strand, within LU632_RS25445 at 26.087 kb on + strand at 26.115 kb on + strand at 26.195 kb on + strand, within LU632_RS25450 at 26.221 kb on + strand, within LU632_RS25450 at 26.221 kb on + strand, within LU632_RS25450 at 26.281 kb on - strand, within LU632_RS25450 at 26.395 kb on + strand, within LU632_RS25450 at 26.492 kb on - strand at 26.535 kb on + strand at 26.536 kb on - strand at 26.653 kb on + strand at 26.656 kb on - strand at 26.714 kb on - strand at 26.730 kb on - strand at 26.796 kb on + strand at 26.797 kb on - strand at 26.820 kb on + strand, within LU632_RS25455 at 26.868 kb on + strand, within LU632_RS25455 at 26.869 kb on - strand, within LU632_RS25455 at 27.085 kb on + strand at 27.312 kb on + strand at 27.421 kb on + strand, within LU632_RS25460 at 27.421 kb on + strand, within LU632_RS25460 at 27.442 kb on + strand, within LU632_RS25460 at 27.443 kb on - strand, within LU632_RS25460 at 27.447 kb on - strand, within LU632_RS25460
Per-strain Table
Position Strand Gene LocusTag Fraction MelonXylem remove 25,188 + LU632_RS25445 0.50 -0.4 25,361 + LU632_RS25445 0.59 -0.1 25,362 - LU632_RS25445 0.59 +2.0 25,362 - LU632_RS25445 0.59 +0.4 25,362 - LU632_RS25445 0.59 -0.8 25,373 - LU632_RS25445 0.60 +0.4 25,480 - LU632_RS25445 0.65 +0.4 25,558 + LU632_RS25445 0.69 +0.5 25,604 + LU632_RS25445 0.72 -0.1 25,605 - LU632_RS25445 0.72 -1.0 25,605 - LU632_RS25445 0.72 -0.0 25,623 - LU632_RS25445 0.73 +0.6 25,697 + LU632_RS25445 0.76 +0.0 25,697 + LU632_RS25445 0.76 +1.0 25,697 + LU632_RS25445 0.76 +1.0 25,697 + LU632_RS25445 0.76 -0.6 25,698 - LU632_RS25445 0.77 -0.2 25,698 - LU632_RS25445 0.77 +0.4 25,726 - LU632_RS25445 0.78 +0.5 25,802 + LU632_RS25445 0.82 +1.4 26,087 + -1.2 26,115 + -0.9 26,195 + LU632_RS25450 0.12 -0.3 26,221 + LU632_RS25450 0.20 +3.0 26,221 + LU632_RS25450 0.20 -1.3 26,281 - LU632_RS25450 0.37 -0.4 26,395 + LU632_RS25450 0.70 -0.8 26,492 - +0.3 26,535 + +0.5 26,536 - -0.3 26,653 + -0.4 26,656 - +0.3 26,714 - -0.3 26,730 - -1.6 26,796 + -0.8 26,797 - +0.1 26,820 + LU632_RS25455 0.14 -0.1 26,868 + LU632_RS25455 0.29 -0.2 26,869 - LU632_RS25455 0.30 +0.9 27,085 + -0.4 27,312 + -0.5 27,421 + LU632_RS25460 0.19 -0.6 27,421 + LU632_RS25460 0.19 +0.8 27,442 + LU632_RS25460 0.22 +0.6 27,443 - LU632_RS25460 0.22 +0.1 27,447 - LU632_RS25460 0.22 +0.7
Or see this region's nucleotide sequence