Experiment: MelonXylem
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS25430 and LU632_RS25435 overlap by 32 nucleotides LU632_RS25435 and LU632_RS25440 are separated by 323 nucleotides LU632_RS25440 and LU632_RS25445 are separated by 14 nucleotides
LU632_RS25430: LU632_RS25430 - conjugal transfer protein TrbC, at 20,585 to 22,915
_RS25430
LU632_RS25435: LU632_RS25435 - phospholipase D family protein, at 22,884 to 23,357
_RS25435
LU632_RS25440: LU632_RS25440 - hypothetical protein, at 23,681 to 24,205
_RS25440
LU632_RS25445: LU632_RS25445 - relaxase/mobilization nuclease domain-containing protein, at 24,220 to 26,151
_RS25445
Position (kb) 23
24
25 Strain fitness (log2 ratio) -2
-1
0
1
2 at 22.686 kb on + strand at 22.686 kb on + strand at 22.686 kb on + strand at 22.687 kb on - strand at 22.687 kb on - strand at 22.687 kb on - strand at 22.817 kb on + strand at 22.817 kb on + strand at 22.817 kb on + strand at 22.819 kb on + strand at 22.820 kb on - strand at 22.820 kb on - strand at 22.820 kb on - strand at 22.820 kb on - strand at 22.820 kb on - strand at 22.820 kb on - strand at 22.835 kb on + strand at 22.835 kb on + strand at 22.835 kb on + strand at 22.836 kb on - strand at 22.836 kb on - strand at 22.836 kb on - strand at 22.836 kb on - strand at 22.873 kb on + strand at 22.918 kb on + strand at 22.979 kb on + strand, within LU632_RS25435 at 22.979 kb on + strand, within LU632_RS25435 at 22.979 kb on + strand, within LU632_RS25435 at 22.979 kb on + strand, within LU632_RS25435 at 22.980 kb on - strand, within LU632_RS25435 at 22.980 kb on - strand, within LU632_RS25435 at 22.980 kb on - strand, within LU632_RS25435 at 23.013 kb on + strand, within LU632_RS25435 at 23.015 kb on + strand, within LU632_RS25435 at 23.015 kb on + strand, within LU632_RS25435 at 23.015 kb on + strand, within LU632_RS25435 at 23.015 kb on + strand, within LU632_RS25435 at 23.015 kb on + strand, within LU632_RS25435 at 23.016 kb on - strand, within LU632_RS25435 at 23.016 kb on - strand, within LU632_RS25435 at 23.016 kb on - strand, within LU632_RS25435 at 23.016 kb on - strand, within LU632_RS25435 at 23.125 kb on + strand, within LU632_RS25435 at 23.142 kb on - strand, within LU632_RS25435 at 23.238 kb on + strand, within LU632_RS25435 at 23.238 kb on + strand, within LU632_RS25435 at 23.238 kb on + strand, within LU632_RS25435 at 23.238 kb on + strand, within LU632_RS25435 at 23.238 kb on + strand, within LU632_RS25435 at 23.314 kb on - strand at 23.328 kb on - strand at 23.335 kb on + strand at 23.336 kb on - strand at 23.355 kb on + strand at 23.407 kb on + strand at 23.412 kb on + strand at 23.412 kb on + strand at 23.413 kb on - strand at 23.442 kb on + strand at 23.443 kb on - strand at 23.599 kb on + strand at 23.692 kb on + strand at 23.692 kb on + strand at 23.692 kb on + strand at 23.692 kb on + strand at 23.693 kb on - strand at 23.693 kb on - strand at 23.698 kb on + strand at 23.698 kb on + strand at 23.698 kb on + strand at 23.698 kb on + strand at 23.698 kb on + strand at 23.698 kb on + strand at 23.698 kb on + strand at 23.698 kb on + strand at 23.699 kb on - strand at 23.699 kb on - strand at 23.699 kb on - strand at 23.699 kb on - strand at 23.699 kb on - strand at 23.709 kb on - strand at 23.833 kb on + strand, within LU632_RS25440 at 23.863 kb on + strand, within LU632_RS25440 at 23.902 kb on - strand, within LU632_RS25440 at 24.031 kb on + strand, within LU632_RS25440 at 24.031 kb on + strand, within LU632_RS25440 at 24.031 kb on + strand, within LU632_RS25440 at 24.031 kb on + strand, within LU632_RS25440 at 24.031 kb on + strand, within LU632_RS25440 at 24.031 kb on + strand, within LU632_RS25440 at 24.031 kb on + strand, within LU632_RS25440 at 24.031 kb on + strand, within LU632_RS25440 at 24.031 kb on + strand, within LU632_RS25440 at 24.031 kb on + strand, within LU632_RS25440 at 24.031 kb on + strand, within LU632_RS25440 at 24.031 kb on + strand, within LU632_RS25440 at 24.031 kb on + strand, within LU632_RS25440 at 24.031 kb on + strand, within LU632_RS25440 at 24.032 kb on - strand, within LU632_RS25440 at 24.032 kb on - strand, within LU632_RS25440 at 24.032 kb on - strand, within LU632_RS25440 at 24.032 kb on - strand, within LU632_RS25440 at 24.032 kb on - strand, within LU632_RS25440 at 24.032 kb on - strand, within LU632_RS25440 at 24.032 kb on - strand, within LU632_RS25440 at 24.032 kb on - strand, within LU632_RS25440 at 24.032 kb on - strand, within LU632_RS25440 at 24.032 kb on - strand, within LU632_RS25440 at 24.032 kb on - strand, within LU632_RS25440 at 24.032 kb on - strand, within LU632_RS25440 at 24.032 kb on - strand, within LU632_RS25440 at 24.032 kb on - strand, within LU632_RS25440 at 24.040 kb on - strand, within LU632_RS25440 at 24.110 kb on - strand, within LU632_RS25440 at 24.160 kb on + strand at 24.161 kb on - strand at 24.198 kb on - strand at 24.208 kb on - strand at 24.261 kb on + strand at 24.262 kb on - strand at 24.262 kb on - strand at 24.264 kb on + strand at 24.264 kb on + strand at 24.264 kb on + strand at 24.265 kb on - strand at 24.265 kb on - strand at 24.311 kb on + strand at 24.386 kb on + strand at 24.397 kb on - strand at 24.414 kb on + strand, within LU632_RS25445 at 24.516 kb on + strand, within LU632_RS25445 at 24.517 kb on - strand, within LU632_RS25445 at 24.518 kb on + strand, within LU632_RS25445 at 24.518 kb on + strand, within LU632_RS25445 at 24.518 kb on + strand, within LU632_RS25445 at 24.518 kb on + strand, within LU632_RS25445 at 24.518 kb on + strand, within LU632_RS25445 at 24.518 kb on + strand, within LU632_RS25445 at 24.518 kb on + strand, within LU632_RS25445 at 24.519 kb on - strand, within LU632_RS25445 at 24.519 kb on - strand, within LU632_RS25445 at 24.547 kb on - strand, within LU632_RS25445 at 24.560 kb on + strand, within LU632_RS25445 at 24.561 kb on - strand, within LU632_RS25445 at 24.561 kb on - strand, within LU632_RS25445 at 24.561 kb on - strand, within LU632_RS25445 at 24.645 kb on + strand, within LU632_RS25445 at 24.645 kb on + strand, within LU632_RS25445 at 24.646 kb on - strand, within LU632_RS25445 at 24.646 kb on - strand, within LU632_RS25445 at 24.648 kb on + strand, within LU632_RS25445 at 24.649 kb on - strand, within LU632_RS25445 at 24.649 kb on - strand, within LU632_RS25445 at 24.918 kb on + strand, within LU632_RS25445 at 24.918 kb on + strand, within LU632_RS25445 at 24.919 kb on - strand, within LU632_RS25445 at 24.930 kb on + strand, within LU632_RS25445 at 24.931 kb on - strand, within LU632_RS25445 at 24.932 kb on - strand, within LU632_RS25445 at 25.010 kb on + strand, within LU632_RS25445 at 25.011 kb on - strand, within LU632_RS25445 at 25.020 kb on - strand, within LU632_RS25445 at 25.060 kb on - strand, within LU632_RS25445 at 25.141 kb on - strand, within LU632_RS25445 at 25.141 kb on - strand, within LU632_RS25445 at 25.188 kb on + strand, within LU632_RS25445
Per-strain Table
Position Strand Gene LocusTag Fraction MelonXylem remove 22,686 + -1.6 22,686 + +0.7 22,686 + -0.0 22,687 - -0.9 22,687 - +0.9 22,687 - +0.1 22,817 + +0.2 22,817 + +2.6 22,817 + -0.1 22,819 + -0.9 22,820 - +0.5 22,820 - +0.6 22,820 - +0.4 22,820 - +0.2 22,820 - +0.7 22,820 - +0.0 22,835 + -1.3 22,835 + +0.6 22,835 + +0.9 22,836 - -0.6 22,836 - +0.9 22,836 - +0.1 22,836 - -0.4 22,873 + -0.1 22,918 + +0.2 22,979 + LU632_RS25435 0.20 +0.9 22,979 + LU632_RS25435 0.20 +0.4 22,979 + LU632_RS25435 0.20 -0.2 22,979 + LU632_RS25435 0.20 +1.1 22,980 - LU632_RS25435 0.20 -0.9 22,980 - LU632_RS25435 0.20 -0.2 22,980 - LU632_RS25435 0.20 -0.6 23,013 + LU632_RS25435 0.27 +0.5 23,015 + LU632_RS25435 0.28 +0.1 23,015 + LU632_RS25435 0.28 +1.4 23,015 + LU632_RS25435 0.28 +0.4 23,015 + LU632_RS25435 0.28 +1.1 23,015 + LU632_RS25435 0.28 +0.7 23,016 - LU632_RS25435 0.28 -1.9 23,016 - LU632_RS25435 0.28 +0.3 23,016 - LU632_RS25435 0.28 +0.7 23,016 - LU632_RS25435 0.28 -0.9 23,125 + LU632_RS25435 0.51 +0.7 23,142 - LU632_RS25435 0.54 +0.4 23,238 + LU632_RS25435 0.75 +0.8 23,238 + LU632_RS25435 0.75 +1.1 23,238 + LU632_RS25435 0.75 +0.3 23,238 + LU632_RS25435 0.75 -0.4 23,238 + LU632_RS25435 0.75 +0.4 23,314 - -0.7 23,328 - -0.6 23,335 + +0.6 23,336 - +0.4 23,355 + -0.0 23,407 + -0.6 23,412 + -0.0 23,412 + -0.3 23,413 - +1.4 23,442 + -0.3 23,443 - +0.8 23,599 + +0.3 23,692 + -0.0 23,692 + +0.8 23,692 + +0.2 23,692 + -0.0 23,693 - +0.2 23,693 - -0.3 23,698 + +0.7 23,698 + +0.2 23,698 + +1.2 23,698 + -0.2 23,698 + +0.4 23,698 + +0.4 23,698 + -0.2 23,698 + -0.3 23,699 - -0.4 23,699 - -0.1 23,699 - -0.1 23,699 - +0.6 23,699 - +0.2 23,709 - +0.3 23,833 + LU632_RS25440 0.29 +0.6 23,863 + LU632_RS25440 0.35 -0.6 23,902 - LU632_RS25440 0.42 +0.1 24,031 + LU632_RS25440 0.67 -1.4 24,031 + LU632_RS25440 0.67 -0.9 24,031 + LU632_RS25440 0.67 +0.1 24,031 + LU632_RS25440 0.67 +0.5 24,031 + LU632_RS25440 0.67 -0.1 24,031 + LU632_RS25440 0.67 +0.0 24,031 + LU632_RS25440 0.67 -0.3 24,031 + LU632_RS25440 0.67 -0.4 24,031 + LU632_RS25440 0.67 +0.8 24,031 + LU632_RS25440 0.67 -0.5 24,031 + LU632_RS25440 0.67 +2.0 24,031 + LU632_RS25440 0.67 +0.1 24,031 + LU632_RS25440 0.67 +0.2 24,031 + LU632_RS25440 0.67 -0.1 24,032 - LU632_RS25440 0.67 +0.5 24,032 - LU632_RS25440 0.67 -0.3 24,032 - LU632_RS25440 0.67 +0.3 24,032 - LU632_RS25440 0.67 +0.1 24,032 - LU632_RS25440 0.67 -0.2 24,032 - LU632_RS25440 0.67 +0.8 24,032 - LU632_RS25440 0.67 +0.6 24,032 - LU632_RS25440 0.67 -0.8 24,032 - LU632_RS25440 0.67 -1.2 24,032 - LU632_RS25440 0.67 -0.4 24,032 - LU632_RS25440 0.67 +0.6 24,032 - LU632_RS25440 0.67 -0.7 24,032 - LU632_RS25440 0.67 -0.4 24,032 - LU632_RS25440 0.67 -0.4 24,040 - LU632_RS25440 0.68 -0.6 24,110 - LU632_RS25440 0.82 -0.2 24,160 + -0.4 24,161 - +0.6 24,198 - +0.4 24,208 - -0.9 24,261 + +0.0 24,262 - +2.0 24,262 - +0.4 24,264 + -0.4 24,264 + -0.4 24,264 + +0.8 24,265 - +2.7 24,265 - -0.5 24,311 + +0.4 24,386 + +0.6 24,397 - +0.8 24,414 + LU632_RS25445 0.10 -0.4 24,516 + LU632_RS25445 0.15 +0.4 24,517 - LU632_RS25445 0.15 -0.8 24,518 + LU632_RS25445 0.15 -0.2 24,518 + LU632_RS25445 0.15 -1.3 24,518 + LU632_RS25445 0.15 -0.3 24,518 + LU632_RS25445 0.15 -0.5 24,518 + LU632_RS25445 0.15 -0.3 24,518 + LU632_RS25445 0.15 -0.4 24,518 + LU632_RS25445 0.15 -1.3 24,519 - LU632_RS25445 0.15 +1.4 24,519 - LU632_RS25445 0.15 -0.6 24,547 - LU632_RS25445 0.17 -0.2 24,560 + LU632_RS25445 0.18 -0.9 24,561 - LU632_RS25445 0.18 -1.4 24,561 - LU632_RS25445 0.18 -0.1 24,561 - LU632_RS25445 0.18 -1.0 24,645 + LU632_RS25445 0.22 +1.4 24,645 + LU632_RS25445 0.22 -0.8 24,646 - LU632_RS25445 0.22 -1.0 24,646 - LU632_RS25445 0.22 -0.4 24,648 + LU632_RS25445 0.22 -0.0 24,649 - LU632_RS25445 0.22 +0.3 24,649 - LU632_RS25445 0.22 +0.4 24,918 + LU632_RS25445 0.36 +1.4 24,918 + LU632_RS25445 0.36 +0.4 24,919 - LU632_RS25445 0.36 +0.2 24,930 + LU632_RS25445 0.37 +0.8 24,931 - LU632_RS25445 0.37 -0.4 24,932 - LU632_RS25445 0.37 -0.3 25,010 + LU632_RS25445 0.41 +1.0 25,011 - LU632_RS25445 0.41 -0.8 25,020 - LU632_RS25445 0.41 -0.8 25,060 - LU632_RS25445 0.43 -0.3 25,141 - LU632_RS25445 0.48 -0.0 25,141 - LU632_RS25445 0.48 +2.1 25,188 + LU632_RS25445 0.50 -0.4
Or see this region's nucleotide sequence