Experiment: MelonXylem
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt traO and LU632_RS25365 are separated by 11 nucleotides LU632_RS25365 and traQ overlap by 1 nucleotides traQ and LU632_RS25375 are separated by 26 nucleotides LU632_RS25375 and LU632_RS25380 are separated by 51 nucleotides
LU632_RS25360: traO - conjugal transfer protein TraO, at 5,802 to 7,061
traO
LU632_RS25365: LU632_RS25365 - hypothetical protein, at 7,073 to 7,867
_RS25365
LU632_RS25370: traQ - conjugal transfer protein TraQ, at 7,867 to 8,394
traQ
LU632_RS25375: LU632_RS25375 - hypothetical protein, at 8,421 to 8,804
_RS25375
LU632_RS25380: LU632_RS25380 - hypothetical protein, at 8,856 to 9,809
_RS25380
Position (kb) 7
8 Strain fitness (log2 ratio) -1
0
1
2 at 6.239 kb on - strand, within traO at 6.277 kb on + strand, within traO at 6.278 kb on - strand, within traO at 6.432 kb on - strand, within traO at 6.528 kb on + strand, within traO at 6.529 kb on - strand, within traO at 6.545 kb on - strand, within traO at 6.545 kb on - strand, within traO at 6.585 kb on - strand, within traO at 6.611 kb on + strand, within traO at 6.611 kb on + strand, within traO at 6.612 kb on - strand, within traO at 6.626 kb on + strand, within traO at 6.695 kb on + strand, within traO at 6.695 kb on + strand, within traO at 6.695 kb on + strand, within traO at 6.696 kb on - strand, within traO at 6.696 kb on - strand, within traO at 6.754 kb on - strand, within traO at 6.754 kb on - strand, within traO at 6.754 kb on - strand, within traO at 6.767 kb on + strand, within traO at 6.968 kb on - strand at 7.051 kb on + strand at 7.051 kb on + strand at 7.052 kb on - strand at 7.052 kb on - strand at 7.052 kb on - strand at 7.052 kb on - strand at 7.212 kb on - strand, within LU632_RS25365 at 7.251 kb on + strand, within LU632_RS25365 at 7.252 kb on - strand, within LU632_RS25365 at 7.258 kb on - strand, within LU632_RS25365 at 7.265 kb on + strand, within LU632_RS25365 at 7.265 kb on + strand, within LU632_RS25365 at 7.360 kb on - strand, within LU632_RS25365 at 7.495 kb on - strand, within LU632_RS25365 at 7.612 kb on - strand, within LU632_RS25365 at 7.695 kb on + strand, within LU632_RS25365 at 7.695 kb on + strand, within LU632_RS25365 at 7.695 kb on + strand, within LU632_RS25365 at 7.696 kb on - strand, within LU632_RS25365 at 7.714 kb on + strand, within LU632_RS25365 at 7.714 kb on + strand, within LU632_RS25365 at 7.714 kb on + strand, within LU632_RS25365 at 7.714 kb on + strand, within LU632_RS25365 at 7.714 kb on + strand, within LU632_RS25365 at 7.715 kb on - strand, within LU632_RS25365 at 7.715 kb on - strand, within LU632_RS25365 at 7.715 kb on - strand, within LU632_RS25365 at 7.715 kb on - strand, within LU632_RS25365 at 7.932 kb on - strand, within traQ at 8.010 kb on + strand, within traQ at 8.089 kb on - strand, within traQ at 8.140 kb on + strand, within traQ at 8.141 kb on - strand, within traQ at 8.234 kb on + strand, within traQ at 8.234 kb on + strand, within traQ at 8.234 kb on + strand, within traQ at 8.235 kb on - strand, within traQ at 8.235 kb on - strand, within traQ at 8.235 kb on - strand, within traQ at 8.392 kb on + strand at 8.400 kb on + strand at 8.643 kb on - strand, within LU632_RS25375 at 8.645 kb on + strand, within LU632_RS25375 at 8.654 kb on - strand, within LU632_RS25375 at 8.842 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction MelonXylem remove 6,239 - traO LU632_RS25360 0.35 -0.3 6,277 + traO LU632_RS25360 0.38 -0.9 6,278 - traO LU632_RS25360 0.38 -0.9 6,432 - traO LU632_RS25360 0.50 -0.7 6,528 + traO LU632_RS25360 0.58 +0.1 6,529 - traO LU632_RS25360 0.58 +1.0 6,545 - traO LU632_RS25360 0.59 -0.2 6,545 - traO LU632_RS25360 0.59 -0.1 6,585 - traO LU632_RS25360 0.62 -0.5 6,611 + traO LU632_RS25360 0.64 +0.6 6,611 + traO LU632_RS25360 0.64 -0.9 6,612 - traO LU632_RS25360 0.64 -0.2 6,626 + traO LU632_RS25360 0.65 -0.9 6,695 + traO LU632_RS25360 0.71 +0.4 6,695 + traO LU632_RS25360 0.71 -0.5 6,695 + traO LU632_RS25360 0.71 +0.1 6,696 - traO LU632_RS25360 0.71 +1.4 6,696 - traO LU632_RS25360 0.71 -0.6 6,754 - traO LU632_RS25360 0.76 +2.0 6,754 - traO LU632_RS25360 0.76 -0.2 6,754 - traO LU632_RS25360 0.76 +0.1 6,767 + traO LU632_RS25360 0.77 -0.5 6,968 - -0.6 7,051 + -0.7 7,051 + +0.9 7,052 - +0.2 7,052 - +0.8 7,052 - -0.5 7,052 - +0.4 7,212 - LU632_RS25365 0.17 +1.0 7,251 + LU632_RS25365 0.22 -1.1 7,252 - LU632_RS25365 0.23 +2.4 7,258 - LU632_RS25365 0.23 +0.5 7,265 + LU632_RS25365 0.24 +1.0 7,265 + LU632_RS25365 0.24 +0.5 7,360 - LU632_RS25365 0.36 -0.5 7,495 - LU632_RS25365 0.53 +1.1 7,612 - LU632_RS25365 0.68 -0.9 7,695 + LU632_RS25365 0.78 +0.7 7,695 + LU632_RS25365 0.78 -0.2 7,695 + LU632_RS25365 0.78 -0.1 7,696 - LU632_RS25365 0.78 +0.4 7,714 + LU632_RS25365 0.81 -0.1 7,714 + LU632_RS25365 0.81 +1.0 7,714 + LU632_RS25365 0.81 +0.1 7,714 + LU632_RS25365 0.81 -0.0 7,714 + LU632_RS25365 0.81 -0.4 7,715 - LU632_RS25365 0.81 +0.2 7,715 - LU632_RS25365 0.81 -0.1 7,715 - LU632_RS25365 0.81 -0.2 7,715 - LU632_RS25365 0.81 +0.2 7,932 - traQ LU632_RS25370 0.12 -0.3 8,010 + traQ LU632_RS25370 0.27 +0.2 8,089 - traQ LU632_RS25370 0.42 -1.1 8,140 + traQ LU632_RS25370 0.52 +0.3 8,141 - traQ LU632_RS25370 0.52 -1.3 8,234 + traQ LU632_RS25370 0.70 -0.2 8,234 + traQ LU632_RS25370 0.70 -1.6 8,234 + traQ LU632_RS25370 0.70 +0.5 8,235 - traQ LU632_RS25370 0.70 +0.4 8,235 - traQ LU632_RS25370 0.70 +1.0 8,235 - traQ LU632_RS25370 0.70 -0.4 8,392 + -0.5 8,400 + +2.4 8,643 - LU632_RS25375 0.58 -0.3 8,645 + LU632_RS25375 0.58 +0.4 8,654 - LU632_RS25375 0.61 +0.2 8,842 + -0.0
Or see this region's nucleotide sequence