Experiment: MelonXylem
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS25345 and LU632_RS25350 are separated by 15 nucleotides LU632_RS25350 and LU632_RS25355 are separated by 60 nucleotides LU632_RS25355 and traO are separated by 2 nucleotides
LU632_RS25345: LU632_RS25345 - DotI/IcmL family type IV secretion protein, at 4,156 to 4,776
_RS25345
LU632_RS25350: LU632_RS25350 - hypothetical protein, at 4,792 to 5,073
_RS25350
LU632_RS25355: LU632_RS25355 - DotH/IcmK family type IV secretion protein, at 5,134 to 5,799
_RS25355
LU632_RS25360: traO - conjugal transfer protein TraO, at 5,802 to 7,061
traO
Position (kb) 5
6 Strain fitness (log2 ratio) -1
0
1
2 at 4.135 kb on + strand at 4.136 kb on - strand at 4.136 kb on - strand at 4.200 kb on + strand at 4.300 kb on + strand, within LU632_RS25345 at 4.443 kb on - strand, within LU632_RS25345 at 4.443 kb on - strand, within LU632_RS25345 at 4.487 kb on - strand, within LU632_RS25345 at 4.487 kb on - strand, within LU632_RS25345 at 4.489 kb on + strand, within LU632_RS25345 at 4.490 kb on - strand, within LU632_RS25345 at 4.490 kb on - strand, within LU632_RS25345 at 4.490 kb on - strand, within LU632_RS25345 at 4.612 kb on + strand, within LU632_RS25345 at 4.612 kb on + strand, within LU632_RS25345 at 4.612 kb on + strand, within LU632_RS25345 at 4.612 kb on + strand, within LU632_RS25345 at 4.613 kb on - strand, within LU632_RS25345 at 4.613 kb on - strand, within LU632_RS25345 at 4.613 kb on - strand, within LU632_RS25345 at 4.613 kb on - strand, within LU632_RS25345 at 4.613 kb on - strand, within LU632_RS25345 at 4.613 kb on - strand, within LU632_RS25345 at 4.613 kb on - strand, within LU632_RS25345 at 4.613 kb on - strand, within LU632_RS25345 at 4.614 kb on + strand, within LU632_RS25345 at 4.614 kb on + strand, within LU632_RS25345 at 4.614 kb on + strand, within LU632_RS25345 at 4.615 kb on - strand, within LU632_RS25345 at 4.692 kb on + strand, within LU632_RS25345 at 4.977 kb on + strand, within LU632_RS25350 at 4.988 kb on + strand, within LU632_RS25350 at 5.272 kb on + strand, within LU632_RS25355 at 5.272 kb on + strand, within LU632_RS25355 at 5.275 kb on - strand, within LU632_RS25355 at 5.275 kb on - strand, within LU632_RS25355 at 5.578 kb on - strand, within LU632_RS25355 at 5.650 kb on + strand, within LU632_RS25355 at 5.650 kb on + strand, within LU632_RS25355 at 5.650 kb on + strand, within LU632_RS25355 at 5.650 kb on + strand, within LU632_RS25355 at 5.650 kb on + strand, within LU632_RS25355 at 5.650 kb on + strand, within LU632_RS25355 at 5.651 kb on - strand, within LU632_RS25355 at 5.651 kb on - strand, within LU632_RS25355 at 5.722 kb on + strand, within LU632_RS25355 at 5.722 kb on + strand, within LU632_RS25355 at 5.723 kb on - strand, within LU632_RS25355 at 5.723 kb on - strand, within LU632_RS25355 at 5.786 kb on + strand at 5.787 kb on - strand at 5.787 kb on - strand at 5.787 kb on - strand at 5.787 kb on - strand at 5.798 kb on - strand at 5.848 kb on + strand at 5.849 kb on - strand at 5.858 kb on + strand at 5.994 kb on + strand, within traO at 6.007 kb on + strand, within traO at 6.007 kb on + strand, within traO at 6.008 kb on - strand, within traO at 6.239 kb on - strand, within traO at 6.277 kb on + strand, within traO at 6.278 kb on - strand, within traO at 6.432 kb on - strand, within traO at 6.528 kb on + strand, within traO at 6.529 kb on - strand, within traO at 6.545 kb on - strand, within traO at 6.545 kb on - strand, within traO at 6.585 kb on - strand, within traO at 6.611 kb on + strand, within traO at 6.611 kb on + strand, within traO at 6.612 kb on - strand, within traO at 6.626 kb on + strand, within traO at 6.695 kb on + strand, within traO at 6.695 kb on + strand, within traO at 6.695 kb on + strand, within traO at 6.696 kb on - strand, within traO at 6.696 kb on - strand, within traO at 6.754 kb on - strand, within traO at 6.754 kb on - strand, within traO at 6.754 kb on - strand, within traO at 6.767 kb on + strand, within traO
Per-strain Table
Position Strand Gene LocusTag Fraction MelonXylem remove 4,135 + +2.4 4,136 - -0.5 4,136 - -1.1 4,200 + -0.4 4,300 + LU632_RS25345 0.23 +1.1 4,443 - LU632_RS25345 0.46 +0.3 4,443 - LU632_RS25345 0.46 +0.6 4,487 - LU632_RS25345 0.53 -0.6 4,487 - LU632_RS25345 0.53 -0.1 4,489 + LU632_RS25345 0.54 +0.7 4,490 - LU632_RS25345 0.54 +1.4 4,490 - LU632_RS25345 0.54 -0.6 4,490 - LU632_RS25345 0.54 +0.6 4,612 + LU632_RS25345 0.73 -1.0 4,612 + LU632_RS25345 0.73 -0.1 4,612 + LU632_RS25345 0.73 +1.1 4,612 + LU632_RS25345 0.73 +0.4 4,613 - LU632_RS25345 0.74 -0.5 4,613 - LU632_RS25345 0.74 -0.3 4,613 - LU632_RS25345 0.74 +0.1 4,613 - LU632_RS25345 0.74 +0.2 4,613 - LU632_RS25345 0.74 +0.0 4,613 - LU632_RS25345 0.74 -0.2 4,613 - LU632_RS25345 0.74 +0.3 4,613 - LU632_RS25345 0.74 -0.2 4,614 + LU632_RS25345 0.74 -0.3 4,614 + LU632_RS25345 0.74 -0.9 4,614 + LU632_RS25345 0.74 -0.0 4,615 - LU632_RS25345 0.74 -0.3 4,692 + LU632_RS25345 0.86 +0.6 4,977 + LU632_RS25350 0.66 +0.2 4,988 + LU632_RS25350 0.70 +0.1 5,272 + LU632_RS25355 0.21 -1.3 5,272 + LU632_RS25355 0.21 -0.5 5,275 - LU632_RS25355 0.21 +0.1 5,275 - LU632_RS25355 0.21 -0.6 5,578 - LU632_RS25355 0.67 +1.0 5,650 + LU632_RS25355 0.77 +0.7 5,650 + LU632_RS25355 0.77 -0.9 5,650 + LU632_RS25355 0.77 +0.2 5,650 + LU632_RS25355 0.77 -0.9 5,650 + LU632_RS25355 0.77 +0.2 5,650 + LU632_RS25355 0.77 -0.6 5,651 - LU632_RS25355 0.78 -0.0 5,651 - LU632_RS25355 0.78 +0.6 5,722 + LU632_RS25355 0.88 +0.4 5,722 + LU632_RS25355 0.88 -0.0 5,723 - LU632_RS25355 0.88 +1.2 5,723 - LU632_RS25355 0.88 +1.4 5,786 + +0.3 5,787 - +0.8 5,787 - -0.9 5,787 - +0.1 5,787 - +0.2 5,798 - -1.4 5,848 + -0.0 5,849 - +0.1 5,858 + +2.4 5,994 + traO LU632_RS25360 0.15 -0.4 6,007 + traO LU632_RS25360 0.16 -0.1 6,007 + traO LU632_RS25360 0.16 -0.3 6,008 - traO LU632_RS25360 0.16 -0.2 6,239 - traO LU632_RS25360 0.35 -0.3 6,277 + traO LU632_RS25360 0.38 -0.9 6,278 - traO LU632_RS25360 0.38 -0.9 6,432 - traO LU632_RS25360 0.50 -0.7 6,528 + traO LU632_RS25360 0.58 +0.1 6,529 - traO LU632_RS25360 0.58 +1.0 6,545 - traO LU632_RS25360 0.59 -0.2 6,545 - traO LU632_RS25360 0.59 -0.1 6,585 - traO LU632_RS25360 0.62 -0.5 6,611 + traO LU632_RS25360 0.64 +0.6 6,611 + traO LU632_RS25360 0.64 -0.9 6,612 - traO LU632_RS25360 0.64 -0.2 6,626 + traO LU632_RS25360 0.65 -0.9 6,695 + traO LU632_RS25360 0.71 +0.4 6,695 + traO LU632_RS25360 0.71 -0.5 6,695 + traO LU632_RS25360 0.71 +0.1 6,696 - traO LU632_RS25360 0.71 +1.4 6,696 - traO LU632_RS25360 0.71 -0.6 6,754 - traO LU632_RS25360 0.76 +2.0 6,754 - traO LU632_RS25360 0.76 -0.2 6,754 - traO LU632_RS25360 0.76 +0.1 6,767 + traO LU632_RS25360 0.77 -0.5
Or see this region's nucleotide sequence