Experiment: MelonXylem
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS24620 and LU632_RS24625 overlap by 23 nucleotides LU632_RS24625 and LU632_RS24630 are separated by 260 nucleotides LU632_RS24630 and LU632_RS24635 are separated by 154 nucleotides LU632_RS24635 and LU632_RS24640 overlap by 4 nucleotides
LU632_RS24620: LU632_RS24620 - transposase, at 4,691,884 to 4,692,450
_RS24620
LU632_RS24625: LU632_RS24625 - hypothetical protein, at 4,692,428 to 4,692,643
_RS24625
LU632_RS24630: LU632_RS24630 - transposase, at 4,692,904 to 4,693,653
_RS24630
LU632_RS24635: LU632_RS24635 - hypothetical protein, at 4,693,808 to 4,694,242
_RS24635
LU632_RS24640: LU632_RS24640 - hypothetical protein, at 4,694,239 to 4,694,943
_RS24640
Position (kb) 4692
4693
4694 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 4692.851 kb on + strand at 4692.867 kb on + strand at 4692.868 kb on - strand at 4692.869 kb on + strand at 4692.870 kb on - strand at 4692.870 kb on - strand at 4693.214 kb on + strand, within LU632_RS24630 at 4693.215 kb on - strand, within LU632_RS24630 at 4693.220 kb on - strand, within LU632_RS24630 at 4693.237 kb on - strand, within LU632_RS24630 at 4693.301 kb on - strand, within LU632_RS24630 at 4693.301 kb on - strand, within LU632_RS24630 at 4693.445 kb on + strand, within LU632_RS24630 at 4693.445 kb on + strand, within LU632_RS24630 at 4693.564 kb on - strand, within LU632_RS24630 at 4693.702 kb on - strand at 4693.736 kb on + strand at 4693.737 kb on - strand at 4693.740 kb on - strand at 4693.821 kb on + strand at 4693.875 kb on - strand, within LU632_RS24635 at 4693.891 kb on + strand, within LU632_RS24635 at 4693.946 kb on - strand, within LU632_RS24635 at 4693.946 kb on - strand, within LU632_RS24635 at 4693.948 kb on - strand, within LU632_RS24635 at 4693.961 kb on + strand, within LU632_RS24635 at 4693.961 kb on + strand, within LU632_RS24635 at 4693.962 kb on - strand, within LU632_RS24635 at 4693.962 kb on - strand, within LU632_RS24635 at 4693.994 kb on - strand, within LU632_RS24635 at 4694.020 kb on + strand, within LU632_RS24635 at 4694.136 kb on + strand, within LU632_RS24635 at 4694.137 kb on - strand, within LU632_RS24635 at 4694.137 kb on - strand, within LU632_RS24635 at 4694.139 kb on + strand, within LU632_RS24635 at 4694.140 kb on - strand, within LU632_RS24635 at 4694.169 kb on + strand, within LU632_RS24635 at 4694.170 kb on - strand, within LU632_RS24635 at 4694.216 kb on + strand at 4694.217 kb on - strand at 4694.217 kb on - strand at 4694.273 kb on - strand at 4694.338 kb on + strand, within LU632_RS24640 at 4694.339 kb on - strand, within LU632_RS24640 at 4694.371 kb on - strand, within LU632_RS24640 at 4694.427 kb on + strand, within LU632_RS24640 at 4694.457 kb on - strand, within LU632_RS24640 at 4694.459 kb on + strand, within LU632_RS24640 at 4694.640 kb on + strand, within LU632_RS24640
Per-strain Table
Position Strand Gene LocusTag Fraction MelonXylem remove 4,692,851 + -0.0 4,692,867 + -2.9 4,692,868 - +0.1 4,692,869 + +1.0 4,692,870 - -1.0 4,692,870 - -0.2 4,693,214 + LU632_RS24630 0.41 -1.2 4,693,215 - LU632_RS24630 0.41 +0.4 4,693,220 - LU632_RS24630 0.42 +1.1 4,693,237 - LU632_RS24630 0.44 +0.9 4,693,301 - LU632_RS24630 0.53 +1.4 4,693,301 - LU632_RS24630 0.53 -0.9 4,693,445 + LU632_RS24630 0.72 +0.5 4,693,445 + LU632_RS24630 0.72 -1.8 4,693,564 - LU632_RS24630 0.88 +0.5 4,693,702 - +0.1 4,693,736 + -0.3 4,693,737 - -0.4 4,693,740 - +0.7 4,693,821 + +0.3 4,693,875 - LU632_RS24635 0.15 -0.5 4,693,891 + LU632_RS24635 0.19 -0.3 4,693,946 - LU632_RS24635 0.32 -0.2 4,693,946 - LU632_RS24635 0.32 +1.6 4,693,948 - LU632_RS24635 0.32 -0.2 4,693,961 + LU632_RS24635 0.35 +0.1 4,693,961 + LU632_RS24635 0.35 +0.4 4,693,962 - LU632_RS24635 0.35 +0.2 4,693,962 - LU632_RS24635 0.35 -0.7 4,693,994 - LU632_RS24635 0.43 -0.4 4,694,020 + LU632_RS24635 0.49 +0.6 4,694,136 + LU632_RS24635 0.75 -1.2 4,694,137 - LU632_RS24635 0.76 -0.9 4,694,137 - LU632_RS24635 0.76 -0.5 4,694,139 + LU632_RS24635 0.76 +0.5 4,694,140 - LU632_RS24635 0.76 +0.2 4,694,169 + LU632_RS24635 0.83 -0.1 4,694,170 - LU632_RS24635 0.83 -0.0 4,694,216 + +0.0 4,694,217 - +0.4 4,694,217 - -2.5 4,694,273 - -0.6 4,694,338 + LU632_RS24640 0.14 -2.0 4,694,339 - LU632_RS24640 0.14 +0.1 4,694,371 - LU632_RS24640 0.19 -0.2 4,694,427 + LU632_RS24640 0.27 +0.1 4,694,457 - LU632_RS24640 0.31 -0.5 4,694,459 + LU632_RS24640 0.31 +1.1 4,694,640 + LU632_RS24640 0.57 +0.4
Or see this region's nucleotide sequence