Experiment: MelonXylem
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS23085 and LU632_RS23090 are separated by 8 nucleotides LU632_RS23090 and LU632_RS23095 are separated by 74 nucleotides LU632_RS23095 and ggt are separated by 69 nucleotides
LU632_RS23085: LU632_RS23085 - DUF5993 family protein, at 4,397,989 to 4,398,141
_RS23085
LU632_RS23090: LU632_RS23090 - disulfide bond formation protein B, at 4,398,150 to 4,398,701
_RS23090
LU632_RS23095: LU632_RS23095 - phytochelatin synthase family protein, at 4,398,776 to 4,399,555
_RS23095
LU632_RS23100: ggt - gamma-glutamyltransferase, at 4,399,625 to 4,401,388
ggt
Position (kb) 4398
4399
4400 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4397.783 kb on + strand at 4397.949 kb on + strand at 4397.949 kb on + strand at 4397.950 kb on - strand at 4397.950 kb on - strand at 4397.980 kb on + strand at 4397.980 kb on + strand at 4397.981 kb on - strand at 4397.981 kb on - strand at 4397.981 kb on - strand at 4397.992 kb on + strand at 4397.992 kb on + strand at 4397.992 kb on + strand at 4397.993 kb on - strand at 4397.993 kb on - strand at 4397.993 kb on - strand at 4397.993 kb on - strand at 4397.993 kb on - strand at 4398.059 kb on - strand, within LU632_RS23085 at 4398.107 kb on - strand, within LU632_RS23085 at 4398.107 kb on - strand, within LU632_RS23085 at 4398.209 kb on - strand, within LU632_RS23090 at 4398.438 kb on - strand, within LU632_RS23090 at 4398.475 kb on - strand, within LU632_RS23090 at 4398.475 kb on - strand, within LU632_RS23090 at 4398.476 kb on + strand, within LU632_RS23090 at 4398.477 kb on - strand, within LU632_RS23090 at 4398.488 kb on + strand, within LU632_RS23090 at 4398.507 kb on - strand, within LU632_RS23090 at 4398.536 kb on + strand, within LU632_RS23090 at 4398.537 kb on - strand, within LU632_RS23090 at 4398.727 kb on - strand at 4398.748 kb on + strand at 4398.787 kb on - strand at 4398.829 kb on - strand at 4398.947 kb on - strand, within LU632_RS23095 at 4399.059 kb on - strand, within LU632_RS23095 at 4399.059 kb on - strand, within LU632_RS23095 at 4399.102 kb on + strand, within LU632_RS23095 at 4399.102 kb on + strand, within LU632_RS23095 at 4399.103 kb on - strand, within LU632_RS23095 at 4399.124 kb on + strand, within LU632_RS23095 at 4399.124 kb on + strand, within LU632_RS23095 at 4399.125 kb on - strand, within LU632_RS23095 at 4399.132 kb on + strand, within LU632_RS23095 at 4399.297 kb on + strand, within LU632_RS23095 at 4399.484 kb on - strand at 4399.495 kb on + strand at 4399.496 kb on - strand at 4399.574 kb on + strand at 4399.603 kb on + strand at 4399.620 kb on - strand at 4399.748 kb on - strand at 4399.748 kb on - strand at 4399.856 kb on - strand, within ggt at 4399.874 kb on - strand, within ggt at 4399.903 kb on + strand, within ggt at 4399.903 kb on + strand, within ggt at 4399.952 kb on - strand, within ggt at 4399.955 kb on + strand, within ggt at 4399.955 kb on + strand, within ggt at 4399.955 kb on + strand, within ggt at 4399.956 kb on - strand, within ggt at 4399.956 kb on - strand, within ggt at 4399.956 kb on - strand, within ggt at 4400.066 kb on - strand, within ggt at 4400.158 kb on + strand, within ggt at 4400.300 kb on + strand, within ggt at 4400.306 kb on + strand, within ggt at 4400.306 kb on + strand, within ggt at 4400.362 kb on + strand, within ggt at 4400.387 kb on + strand, within ggt at 4400.494 kb on + strand, within ggt at 4400.494 kb on + strand, within ggt at 4400.494 kb on + strand, within ggt at 4400.496 kb on + strand, within ggt at 4400.496 kb on + strand, within ggt at 4400.496 kb on + strand, within ggt at 4400.496 kb on + strand, within ggt at 4400.496 kb on + strand, within ggt at 4400.496 kb on + strand, within ggt at 4400.497 kb on - strand, within ggt at 4400.497 kb on - strand, within ggt at 4400.512 kb on + strand, within ggt at 4400.513 kb on - strand, within ggt at 4400.513 kb on - strand, within ggt
Per-strain Table
Position Strand Gene LocusTag Fraction MelonXylem remove 4,397,783 + +0.8 4,397,949 + -1.0 4,397,949 + +0.5 4,397,950 - +0.3 4,397,950 - +0.2 4,397,980 + -0.0 4,397,980 + +0.7 4,397,981 - +0.3 4,397,981 - -0.3 4,397,981 - +0.5 4,397,992 + -0.4 4,397,992 + -0.1 4,397,992 + +0.1 4,397,993 - -0.4 4,397,993 - +0.4 4,397,993 - +0.2 4,397,993 - -1.1 4,397,993 - -0.3 4,398,059 - LU632_RS23085 0.46 -0.2 4,398,107 - LU632_RS23085 0.77 +0.1 4,398,107 - LU632_RS23085 0.77 +0.9 4,398,209 - LU632_RS23090 0.11 -0.1 4,398,438 - LU632_RS23090 0.52 -0.6 4,398,475 - LU632_RS23090 0.59 -0.6 4,398,475 - LU632_RS23090 0.59 +0.9 4,398,476 + LU632_RS23090 0.59 +0.9 4,398,477 - LU632_RS23090 0.59 -0.7 4,398,488 + LU632_RS23090 0.61 +0.4 4,398,507 - LU632_RS23090 0.65 -1.5 4,398,536 + LU632_RS23090 0.70 -0.8 4,398,537 - LU632_RS23090 0.70 -2.2 4,398,727 - -0.6 4,398,748 + -0.6 4,398,787 - -0.3 4,398,829 - +0.5 4,398,947 - LU632_RS23095 0.22 +0.4 4,399,059 - LU632_RS23095 0.36 -0.8 4,399,059 - LU632_RS23095 0.36 -0.3 4,399,102 + LU632_RS23095 0.42 -0.1 4,399,102 + LU632_RS23095 0.42 -0.2 4,399,103 - LU632_RS23095 0.42 -0.0 4,399,124 + LU632_RS23095 0.45 -0.4 4,399,124 + LU632_RS23095 0.45 +0.2 4,399,125 - LU632_RS23095 0.45 -0.7 4,399,132 + LU632_RS23095 0.46 +0.0 4,399,297 + LU632_RS23095 0.67 +0.3 4,399,484 - +0.1 4,399,495 + -0.1 4,399,496 - -0.9 4,399,574 + +0.3 4,399,603 + -0.0 4,399,620 - +1.8 4,399,748 - +0.3 4,399,748 - +0.1 4,399,856 - ggt LU632_RS23100 0.13 +0.3 4,399,874 - ggt LU632_RS23100 0.14 +0.7 4,399,903 + ggt LU632_RS23100 0.16 -0.2 4,399,903 + ggt LU632_RS23100 0.16 +0.2 4,399,952 - ggt LU632_RS23100 0.19 +0.3 4,399,955 + ggt LU632_RS23100 0.19 -0.6 4,399,955 + ggt LU632_RS23100 0.19 -0.0 4,399,955 + ggt LU632_RS23100 0.19 +1.5 4,399,956 - ggt LU632_RS23100 0.19 +0.3 4,399,956 - ggt LU632_RS23100 0.19 +0.3 4,399,956 - ggt LU632_RS23100 0.19 +0.1 4,400,066 - ggt LU632_RS23100 0.25 +0.1 4,400,158 + ggt LU632_RS23100 0.30 +0.5 4,400,300 + ggt LU632_RS23100 0.38 +0.3 4,400,306 + ggt LU632_RS23100 0.39 -0.3 4,400,306 + ggt LU632_RS23100 0.39 +0.8 4,400,362 + ggt LU632_RS23100 0.42 +0.2 4,400,387 + ggt LU632_RS23100 0.43 -0.0 4,400,494 + ggt LU632_RS23100 0.49 -0.8 4,400,494 + ggt LU632_RS23100 0.49 +0.0 4,400,494 + ggt LU632_RS23100 0.49 +0.7 4,400,496 + ggt LU632_RS23100 0.49 -0.2 4,400,496 + ggt LU632_RS23100 0.49 +0.8 4,400,496 + ggt LU632_RS23100 0.49 +0.1 4,400,496 + ggt LU632_RS23100 0.49 -0.4 4,400,496 + ggt LU632_RS23100 0.49 +0.8 4,400,496 + ggt LU632_RS23100 0.49 -0.3 4,400,497 - ggt LU632_RS23100 0.49 -0.1 4,400,497 - ggt LU632_RS23100 0.49 +0.3 4,400,512 + ggt LU632_RS23100 0.50 -0.1 4,400,513 - ggt LU632_RS23100 0.50 +0.3 4,400,513 - ggt LU632_RS23100 0.50 -0.5
Or see this region's nucleotide sequence