Experiment: MelonXylem
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt tsgA and LU632_RS22830 are separated by 45 nucleotides LU632_RS22830 and LU632_RS22835 are separated by 164 nucleotides LU632_RS22835 and trpS are separated by 38 nucleotides
LU632_RS22825: tsgA - MFS transporter TsgA, at 4,345,698 to 4,346,882
tsgA
LU632_RS22830: LU632_RS22830 - cytosine deaminase, at 4,346,928 to 4,348,205
_RS22830
LU632_RS22835: LU632_RS22835 - hypothetical protein, at 4,348,370 to 4,348,807
_RS22835
LU632_RS22840: trpS - tryptophan--tRNA ligase, at 4,348,846 to 4,349,850
trpS
Position (kb) 4346
4347
4348
4349 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 4345.943 kb on - strand, within tsgA at 4345.943 kb on - strand, within tsgA at 4346.011 kb on + strand, within tsgA at 4346.012 kb on - strand, within tsgA at 4346.020 kb on + strand, within tsgA at 4346.021 kb on - strand, within tsgA at 4346.070 kb on + strand, within tsgA at 4346.194 kb on - strand, within tsgA at 4346.201 kb on + strand, within tsgA at 4346.207 kb on - strand, within tsgA at 4346.346 kb on + strand, within tsgA at 4346.346 kb on + strand, within tsgA at 4346.346 kb on + strand, within tsgA at 4346.347 kb on - strand, within tsgA at 4346.347 kb on - strand, within tsgA at 4346.389 kb on - strand, within tsgA at 4346.397 kb on - strand, within tsgA at 4346.457 kb on + strand, within tsgA at 4346.458 kb on - strand, within tsgA at 4346.458 kb on - strand, within tsgA at 4346.458 kb on - strand, within tsgA at 4346.459 kb on + strand, within tsgA at 4346.459 kb on + strand, within tsgA at 4346.459 kb on + strand, within tsgA at 4346.459 kb on + strand, within tsgA at 4346.460 kb on - strand, within tsgA at 4346.460 kb on - strand, within tsgA at 4346.460 kb on - strand, within tsgA at 4346.460 kb on - strand, within tsgA at 4346.513 kb on + strand, within tsgA at 4346.519 kb on + strand, within tsgA at 4346.553 kb on + strand, within tsgA at 4346.567 kb on + strand, within tsgA at 4346.597 kb on + strand, within tsgA at 4346.627 kb on + strand, within tsgA at 4346.627 kb on + strand, within tsgA at 4346.628 kb on - strand, within tsgA at 4346.631 kb on + strand, within tsgA at 4346.631 kb on + strand, within tsgA at 4346.787 kb on - strand at 4346.816 kb on + strand at 4346.816 kb on + strand at 4346.816 kb on + strand at 4346.817 kb on - strand at 4346.817 kb on - strand at 4346.891 kb on - strand at 4346.965 kb on + strand at 4347.023 kb on - strand at 4347.108 kb on - strand, within LU632_RS22830 at 4347.108 kb on - strand, within LU632_RS22830 at 4347.108 kb on - strand, within LU632_RS22830 at 4347.126 kb on + strand, within LU632_RS22830 at 4347.126 kb on + strand, within LU632_RS22830 at 4347.127 kb on - strand, within LU632_RS22830 at 4347.127 kb on - strand, within LU632_RS22830 at 4347.132 kb on + strand, within LU632_RS22830 at 4347.132 kb on + strand, within LU632_RS22830 at 4347.220 kb on + strand, within LU632_RS22830 at 4347.221 kb on - strand, within LU632_RS22830 at 4347.232 kb on - strand, within LU632_RS22830 at 4347.232 kb on - strand, within LU632_RS22830 at 4347.232 kb on - strand, within LU632_RS22830 at 4347.252 kb on - strand, within LU632_RS22830 at 4347.344 kb on + strand, within LU632_RS22830 at 4347.344 kb on + strand, within LU632_RS22830 at 4347.349 kb on - strand, within LU632_RS22830 at 4347.349 kb on - strand, within LU632_RS22830 at 4347.438 kb on + strand, within LU632_RS22830 at 4347.438 kb on + strand, within LU632_RS22830 at 4347.438 kb on + strand, within LU632_RS22830 at 4347.438 kb on + strand, within LU632_RS22830 at 4347.438 kb on + strand, within LU632_RS22830 at 4347.438 kb on + strand, within LU632_RS22830 at 4347.439 kb on - strand, within LU632_RS22830 at 4347.439 kb on - strand, within LU632_RS22830 at 4347.439 kb on - strand, within LU632_RS22830 at 4347.440 kb on + strand, within LU632_RS22830 at 4347.440 kb on + strand, within LU632_RS22830 at 4347.453 kb on - strand, within LU632_RS22830 at 4347.582 kb on + strand, within LU632_RS22830 at 4347.583 kb on - strand, within LU632_RS22830 at 4347.583 kb on - strand, within LU632_RS22830 at 4347.587 kb on + strand, within LU632_RS22830 at 4347.587 kb on + strand, within LU632_RS22830 at 4347.590 kb on + strand, within LU632_RS22830 at 4347.591 kb on - strand, within LU632_RS22830 at 4347.591 kb on - strand, within LU632_RS22830 at 4347.741 kb on - strand, within LU632_RS22830 at 4347.907 kb on + strand, within LU632_RS22830 at 4347.922 kb on + strand, within LU632_RS22830 at 4347.922 kb on + strand, within LU632_RS22830 at 4347.923 kb on - strand, within LU632_RS22830 at 4347.923 kb on - strand, within LU632_RS22830 at 4348.012 kb on - strand, within LU632_RS22830 at 4348.138 kb on - strand at 4348.193 kb on + strand at 4348.237 kb on + strand at 4348.237 kb on + strand at 4348.244 kb on + strand at 4348.270 kb on - strand at 4348.331 kb on - strand at 4348.331 kb on - strand at 4348.334 kb on + strand at 4348.335 kb on - strand at 4348.335 kb on - strand at 4348.335 kb on - strand at 4348.335 kb on - strand at 4348.335 kb on - strand at 4348.335 kb on - strand at 4348.370 kb on - strand at 4348.408 kb on - strand at 4348.408 kb on - strand at 4348.408 kb on - strand at 4348.408 kb on - strand at 4348.412 kb on + strand at 4348.412 kb on + strand at 4348.476 kb on + strand, within LU632_RS22835 at 4348.476 kb on + strand, within LU632_RS22835 at 4348.477 kb on - strand, within LU632_RS22835 at 4348.480 kb on + strand, within LU632_RS22835 at 4348.481 kb on - strand, within LU632_RS22835 at 4348.481 kb on - strand, within LU632_RS22835 at 4348.481 kb on - strand, within LU632_RS22835 at 4348.526 kb on + strand, within LU632_RS22835 at 4348.526 kb on + strand, within LU632_RS22835 at 4348.526 kb on + strand, within LU632_RS22835 at 4348.527 kb on - strand, within LU632_RS22835 at 4348.565 kb on - strand, within LU632_RS22835 at 4348.662 kb on + strand, within LU632_RS22835 at 4348.662 kb on + strand, within LU632_RS22835 at 4348.662 kb on + strand, within LU632_RS22835 at 4348.663 kb on - strand, within LU632_RS22835 at 4348.663 kb on - strand, within LU632_RS22835 at 4348.668 kb on - strand, within LU632_RS22835 at 4348.770 kb on - strand at 4348.785 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction MelonXylem remove 4,345,943 - tsgA LU632_RS22825 0.21 +0.5 4,345,943 - tsgA LU632_RS22825 0.21 -1.1 4,346,011 + tsgA LU632_RS22825 0.26 -0.3 4,346,012 - tsgA LU632_RS22825 0.26 +1.1 4,346,020 + tsgA LU632_RS22825 0.27 +0.3 4,346,021 - tsgA LU632_RS22825 0.27 -0.5 4,346,070 + tsgA LU632_RS22825 0.31 +1.1 4,346,194 - tsgA LU632_RS22825 0.42 +0.3 4,346,201 + tsgA LU632_RS22825 0.42 +0.9 4,346,207 - tsgA LU632_RS22825 0.43 +0.1 4,346,346 + tsgA LU632_RS22825 0.55 +1.1 4,346,346 + tsgA LU632_RS22825 0.55 -0.5 4,346,346 + tsgA LU632_RS22825 0.55 +0.1 4,346,347 - tsgA LU632_RS22825 0.55 +0.2 4,346,347 - tsgA LU632_RS22825 0.55 -0.5 4,346,389 - tsgA LU632_RS22825 0.58 +0.5 4,346,397 - tsgA LU632_RS22825 0.59 -0.6 4,346,457 + tsgA LU632_RS22825 0.64 +1.1 4,346,458 - tsgA LU632_RS22825 0.64 -0.1 4,346,458 - tsgA LU632_RS22825 0.64 +0.8 4,346,458 - tsgA LU632_RS22825 0.64 +0.9 4,346,459 + tsgA LU632_RS22825 0.64 -0.4 4,346,459 + tsgA LU632_RS22825 0.64 -0.9 4,346,459 + tsgA LU632_RS22825 0.64 +0.1 4,346,459 + tsgA LU632_RS22825 0.64 +0.4 4,346,460 - tsgA LU632_RS22825 0.64 +0.2 4,346,460 - tsgA LU632_RS22825 0.64 -0.0 4,346,460 - tsgA LU632_RS22825 0.64 +0.4 4,346,460 - tsgA LU632_RS22825 0.64 +0.7 4,346,513 + tsgA LU632_RS22825 0.69 +0.2 4,346,519 + tsgA LU632_RS22825 0.69 -0.1 4,346,553 + tsgA LU632_RS22825 0.72 +0.1 4,346,567 + tsgA LU632_RS22825 0.73 -0.5 4,346,597 + tsgA LU632_RS22825 0.76 +0.4 4,346,627 + tsgA LU632_RS22825 0.78 +0.2 4,346,627 + tsgA LU632_RS22825 0.78 -0.6 4,346,628 - tsgA LU632_RS22825 0.78 +0.2 4,346,631 + tsgA LU632_RS22825 0.79 +0.7 4,346,631 + tsgA LU632_RS22825 0.79 +0.1 4,346,787 - -0.2 4,346,816 + +0.6 4,346,816 + -0.7 4,346,816 + -0.1 4,346,817 - +0.8 4,346,817 - -0.0 4,346,891 - +0.4 4,346,965 + -0.6 4,347,023 - -0.1 4,347,108 - LU632_RS22830 0.14 -0.3 4,347,108 - LU632_RS22830 0.14 +0.1 4,347,108 - LU632_RS22830 0.14 -0.1 4,347,126 + LU632_RS22830 0.15 +0.0 4,347,126 + LU632_RS22830 0.15 +0.5 4,347,127 - LU632_RS22830 0.16 +0.3 4,347,127 - LU632_RS22830 0.16 -0.2 4,347,132 + LU632_RS22830 0.16 -0.5 4,347,132 + LU632_RS22830 0.16 -0.1 4,347,220 + LU632_RS22830 0.23 -0.2 4,347,221 - LU632_RS22830 0.23 +0.5 4,347,232 - LU632_RS22830 0.24 -0.3 4,347,232 - LU632_RS22830 0.24 -0.5 4,347,232 - LU632_RS22830 0.24 -0.2 4,347,252 - LU632_RS22830 0.25 +0.1 4,347,344 + LU632_RS22830 0.33 -0.5 4,347,344 + LU632_RS22830 0.33 +0.4 4,347,349 - LU632_RS22830 0.33 -0.4 4,347,349 - LU632_RS22830 0.33 +0.2 4,347,438 + LU632_RS22830 0.40 -0.2 4,347,438 + LU632_RS22830 0.40 -1.3 4,347,438 + LU632_RS22830 0.40 -1.0 4,347,438 + LU632_RS22830 0.40 +1.1 4,347,438 + LU632_RS22830 0.40 +0.7 4,347,438 + LU632_RS22830 0.40 +0.7 4,347,439 - LU632_RS22830 0.40 +0.5 4,347,439 - LU632_RS22830 0.40 +0.1 4,347,439 - LU632_RS22830 0.40 +0.1 4,347,440 + LU632_RS22830 0.40 -0.4 4,347,440 + LU632_RS22830 0.40 +0.5 4,347,453 - LU632_RS22830 0.41 +0.1 4,347,582 + LU632_RS22830 0.51 -3.0 4,347,583 - LU632_RS22830 0.51 -1.5 4,347,583 - LU632_RS22830 0.51 +0.3 4,347,587 + LU632_RS22830 0.52 -1.3 4,347,587 + LU632_RS22830 0.52 -0.3 4,347,590 + LU632_RS22830 0.52 -0.2 4,347,591 - LU632_RS22830 0.52 +1.1 4,347,591 - LU632_RS22830 0.52 -1.6 4,347,741 - LU632_RS22830 0.64 +0.4 4,347,907 + LU632_RS22830 0.77 +0.6 4,347,922 + LU632_RS22830 0.78 +0.1 4,347,922 + LU632_RS22830 0.78 -0.9 4,347,923 - LU632_RS22830 0.78 -0.4 4,347,923 - LU632_RS22830 0.78 -0.5 4,348,012 - LU632_RS22830 0.85 +0.9 4,348,138 - +0.4 4,348,193 + +1.1 4,348,237 + -0.4 4,348,237 + -1.0 4,348,244 + -0.5 4,348,270 - +0.0 4,348,331 - -0.3 4,348,331 - -0.2 4,348,334 + -0.9 4,348,335 - -0.3 4,348,335 - -0.2 4,348,335 - -0.4 4,348,335 - +1.2 4,348,335 - -1.3 4,348,335 - -0.3 4,348,370 - -0.1 4,348,408 - -0.2 4,348,408 - +1.3 4,348,408 - +0.1 4,348,408 - -0.3 4,348,412 + -0.2 4,348,412 + -0.4 4,348,476 + LU632_RS22835 0.24 -0.2 4,348,476 + LU632_RS22835 0.24 -1.5 4,348,477 - LU632_RS22835 0.24 +0.5 4,348,480 + LU632_RS22835 0.25 +1.1 4,348,481 - LU632_RS22835 0.25 -0.1 4,348,481 - LU632_RS22835 0.25 +0.2 4,348,481 - LU632_RS22835 0.25 -0.2 4,348,526 + LU632_RS22835 0.36 -0.3 4,348,526 + LU632_RS22835 0.36 +0.9 4,348,526 + LU632_RS22835 0.36 +1.1 4,348,527 - LU632_RS22835 0.36 -0.4 4,348,565 - LU632_RS22835 0.45 +0.9 4,348,662 + LU632_RS22835 0.67 -1.4 4,348,662 + LU632_RS22835 0.67 -0.2 4,348,662 + LU632_RS22835 0.67 -0.5 4,348,663 - LU632_RS22835 0.67 +0.2 4,348,663 - LU632_RS22835 0.67 -0.5 4,348,668 - LU632_RS22835 0.68 +0.8 4,348,770 - +0.9 4,348,785 + +0.5
Or see this region's nucleotide sequence