Experiment: MelonXylem
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS22030 and LU632_RS22035 are separated by 25 nucleotides LU632_RS22035 and LU632_RS22040 overlap by 20 nucleotides LU632_RS22040 and LU632_RS22045 are separated by 65 nucleotides
LU632_RS22030: LU632_RS22030 - ABC transporter permease, at 4,205,461 to 4,206,552
_RS22030
LU632_RS22035: LU632_RS22035 - ABC transporter ATP-binding protein, at 4,206,578 to 4,207,489
_RS22035
LU632_RS22040: LU632_RS22040 - HlyD family efflux transporter periplasmic adaptor subunit, at 4,207,470 to 4,208,408
_RS22040
LU632_RS22045: LU632_RS22045 - lysophospholipid acyltransferase family protein, at 4,208,474 to 4,210,189
_RS22045
Position (kb) 4207
4208
4209 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4206.511 kb on + strand at 4206.511 kb on + strand at 4206.511 kb on + strand at 4206.607 kb on + strand at 4206.607 kb on + strand at 4206.608 kb on - strand at 4206.608 kb on - strand at 4206.711 kb on + strand, within LU632_RS22035 at 4206.711 kb on + strand, within LU632_RS22035 at 4206.803 kb on + strand, within LU632_RS22035 at 4206.803 kb on + strand, within LU632_RS22035 at 4206.804 kb on - strand, within LU632_RS22035 at 4206.804 kb on - strand, within LU632_RS22035 at 4206.876 kb on + strand, within LU632_RS22035 at 4206.910 kb on + strand, within LU632_RS22035 at 4206.911 kb on - strand, within LU632_RS22035 at 4206.911 kb on - strand, within LU632_RS22035 at 4206.912 kb on + strand, within LU632_RS22035 at 4206.912 kb on + strand, within LU632_RS22035 at 4206.913 kb on - strand, within LU632_RS22035 at 4206.913 kb on - strand, within LU632_RS22035 at 4207.022 kb on + strand, within LU632_RS22035 at 4207.285 kb on + strand, within LU632_RS22035 at 4207.349 kb on - strand, within LU632_RS22035 at 4207.457 kb on - strand at 4207.466 kb on + strand at 4207.467 kb on - strand at 4207.571 kb on + strand, within LU632_RS22040 at 4207.572 kb on - strand, within LU632_RS22040 at 4207.604 kb on - strand, within LU632_RS22040 at 4207.642 kb on + strand, within LU632_RS22040 at 4207.643 kb on - strand, within LU632_RS22040 at 4207.643 kb on - strand, within LU632_RS22040 at 4207.659 kb on + strand, within LU632_RS22040 at 4207.660 kb on - strand, within LU632_RS22040 at 4207.660 kb on - strand, within LU632_RS22040 at 4207.685 kb on - strand, within LU632_RS22040 at 4207.723 kb on - strand, within LU632_RS22040 at 4208.074 kb on + strand, within LU632_RS22040 at 4208.138 kb on + strand, within LU632_RS22040 at 4208.141 kb on + strand, within LU632_RS22040 at 4208.142 kb on - strand, within LU632_RS22040 at 4208.204 kb on - strand, within LU632_RS22040 at 4208.240 kb on + strand, within LU632_RS22040 at 4208.263 kb on - strand, within LU632_RS22040 at 4208.301 kb on + strand, within LU632_RS22040 at 4208.311 kb on - strand, within LU632_RS22040 at 4208.354 kb on - strand at 4208.590 kb on + strand at 4208.876 kb on + strand, within LU632_RS22045 at 4208.989 kb on + strand, within LU632_RS22045 at 4209.057 kb on - strand, within LU632_RS22045 at 4209.059 kb on - strand, within LU632_RS22045 at 4209.138 kb on - strand, within LU632_RS22045 at 4209.389 kb on + strand, within LU632_RS22045 at 4209.390 kb on - strand, within LU632_RS22045
Per-strain Table
Position Strand Gene LocusTag Fraction MelonXylem remove 4,206,511 + +0.3 4,206,511 + -0.6 4,206,511 + +0.1 4,206,607 + +0.0 4,206,607 + +0.4 4,206,608 - +0.0 4,206,608 - -1.9 4,206,711 + LU632_RS22035 0.15 -0.4 4,206,711 + LU632_RS22035 0.15 -0.8 4,206,803 + LU632_RS22035 0.25 +1.3 4,206,803 + LU632_RS22035 0.25 +0.7 4,206,804 - LU632_RS22035 0.25 +0.5 4,206,804 - LU632_RS22035 0.25 -0.0 4,206,876 + LU632_RS22035 0.33 +0.2 4,206,910 + LU632_RS22035 0.36 -1.5 4,206,911 - LU632_RS22035 0.37 +1.5 4,206,911 - LU632_RS22035 0.37 +0.4 4,206,912 + LU632_RS22035 0.37 -0.7 4,206,912 + LU632_RS22035 0.37 +0.3 4,206,913 - LU632_RS22035 0.37 -1.5 4,206,913 - LU632_RS22035 0.37 -0.4 4,207,022 + LU632_RS22035 0.49 +0.9 4,207,285 + LU632_RS22035 0.78 +0.4 4,207,349 - LU632_RS22035 0.85 +0.5 4,207,457 - -0.4 4,207,466 + +1.5 4,207,467 - +0.3 4,207,571 + LU632_RS22040 0.11 +0.0 4,207,572 - LU632_RS22040 0.11 -0.3 4,207,604 - LU632_RS22040 0.14 +0.4 4,207,642 + LU632_RS22040 0.18 +0.1 4,207,643 - LU632_RS22040 0.18 +0.3 4,207,643 - LU632_RS22040 0.18 +0.2 4,207,659 + LU632_RS22040 0.20 -1.3 4,207,660 - LU632_RS22040 0.20 -0.1 4,207,660 - LU632_RS22040 0.20 +0.4 4,207,685 - LU632_RS22040 0.23 -0.8 4,207,723 - LU632_RS22040 0.27 +0.6 4,208,074 + LU632_RS22040 0.64 +1.9 4,208,138 + LU632_RS22040 0.71 +0.2 4,208,141 + LU632_RS22040 0.71 -0.3 4,208,142 - LU632_RS22040 0.72 -1.3 4,208,204 - LU632_RS22040 0.78 +0.1 4,208,240 + LU632_RS22040 0.82 -0.3 4,208,263 - LU632_RS22040 0.84 -1.2 4,208,301 + LU632_RS22040 0.88 +1.6 4,208,311 - LU632_RS22040 0.90 +0.1 4,208,354 - +0.1 4,208,590 + -0.1 4,208,876 + LU632_RS22045 0.23 +0.6 4,208,989 + LU632_RS22045 0.30 +0.6 4,209,057 - LU632_RS22045 0.34 +0.5 4,209,059 - LU632_RS22045 0.34 +0.4 4,209,138 - LU632_RS22045 0.39 -0.0 4,209,389 + LU632_RS22045 0.53 +0.1 4,209,390 - LU632_RS22045 0.53 -1.0
Or see this region's nucleotide sequence