Experiment: MelonXylem
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt fucO and LU632_RS21640 are separated by 237 nucleotides LU632_RS21640 and LU632_RS21645 overlap by 82 nucleotides LU632_RS21645 and LU632_RS21650 are separated by 92 nucleotides LU632_RS21650 and LU632_RS21655 overlap by 14 nucleotides
LU632_RS21635: fucO - lactaldehyde reductase, at 4,137,205 to 4,138,356
fucO
LU632_RS21640: LU632_RS21640 - IS1 family transposase, at 4,138,594 to 4,139,097
_RS21640
LU632_RS21645: LU632_RS21645 - transposase, at 4,139,016 to 4,139,291
_RS21645
LU632_RS21650: LU632_RS21650 - hypothetical protein, at 4,139,384 to 4,139,737
_RS21650
LU632_RS21655: LU632_RS21655 - pesticin C-terminus-like muramidase, at 4,139,724 to 4,140,371
_RS21655
Position (kb) 4138
4139
4140 Strain fitness (log2 ratio) -1
0
1
2
3 at 4137.617 kb on + strand, within fucO at 4137.617 kb on + strand, within fucO at 4137.617 kb on + strand, within fucO at 4137.617 kb on + strand, within fucO at 4137.618 kb on - strand, within fucO at 4137.618 kb on - strand, within fucO at 4137.649 kb on - strand, within fucO at 4137.709 kb on + strand, within fucO at 4137.744 kb on + strand, within fucO at 4137.744 kb on + strand, within fucO at 4137.746 kb on + strand, within fucO at 4137.746 kb on + strand, within fucO at 4137.746 kb on + strand, within fucO at 4137.746 kb on + strand, within fucO at 4137.747 kb on - strand, within fucO at 4137.747 kb on - strand, within fucO at 4137.747 kb on - strand, within fucO at 4137.905 kb on + strand, within fucO at 4138.026 kb on + strand, within fucO at 4138.027 kb on - strand, within fucO at 4138.027 kb on - strand, within fucO at 4138.027 kb on - strand, within fucO at 4138.029 kb on + strand, within fucO at 4138.108 kb on - strand, within fucO at 4138.437 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction MelonXylem remove 4,137,617 + fucO LU632_RS21635 0.36 +0.4 4,137,617 + fucO LU632_RS21635 0.36 +0.8 4,137,617 + fucO LU632_RS21635 0.36 -0.1 4,137,617 + fucO LU632_RS21635 0.36 -1.5 4,137,618 - fucO LU632_RS21635 0.36 -0.6 4,137,618 - fucO LU632_RS21635 0.36 -0.2 4,137,649 - fucO LU632_RS21635 0.39 +0.3 4,137,709 + fucO LU632_RS21635 0.44 +0.0 4,137,744 + fucO LU632_RS21635 0.47 +0.1 4,137,744 + fucO LU632_RS21635 0.47 +0.0 4,137,746 + fucO LU632_RS21635 0.47 +0.6 4,137,746 + fucO LU632_RS21635 0.47 +0.3 4,137,746 + fucO LU632_RS21635 0.47 +0.4 4,137,746 + fucO LU632_RS21635 0.47 -0.2 4,137,747 - fucO LU632_RS21635 0.47 -0.5 4,137,747 - fucO LU632_RS21635 0.47 +0.2 4,137,747 - fucO LU632_RS21635 0.47 -1.6 4,137,905 + fucO LU632_RS21635 0.61 +3.6 4,138,026 + fucO LU632_RS21635 0.71 +0.1 4,138,027 - fucO LU632_RS21635 0.71 +0.0 4,138,027 - fucO LU632_RS21635 0.71 -0.9 4,138,027 - fucO LU632_RS21635 0.71 +0.1 4,138,029 + fucO LU632_RS21635 0.72 +0.7 4,138,108 - fucO LU632_RS21635 0.78 -0.5 4,138,437 + +0.5
Or see this region's nucleotide sequence