Experiment: MelonXylem
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS21390 and LU632_RS21395 are separated by 61 nucleotides LU632_RS21395 and aaeB are separated by 133 nucleotides aaeB and aaeA are separated by 4 nucleotides aaeA and LU632_RS21410 are separated by 7 nucleotides
LU632_RS21390: LU632_RS21390 - IS481 family transposase, at 4,087,742 to 4,088,520
_RS21390
LU632_RS21395: LU632_RS21395 - aldehyde dehydrogenase family protein, at 4,088,582 to 4,088,935
_RS21395
LU632_RS21400: aaeB - p-hydroxybenzoic acid efflux pump subunit AaeB, at 4,089,069 to 4,091,027
aaeB
LU632_RS21405: aaeA - p-hydroxybenzoic acid efflux pump subunit AaeA, at 4,091,032 to 4,091,964
aaeA
LU632_RS21410: LU632_RS21410 - p-hydroxybenzoic acid efflux pump operon protein AaeX, at 4,091,972 to 4,092,175
_RS21410
Position (kb) 4089
4090
4091
4092 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 4088.582 kb on - strand at 4088.833 kb on + strand, within LU632_RS21395 at 4088.834 kb on - strand, within LU632_RS21395 at 4088.879 kb on - strand, within LU632_RS21395 at 4088.879 kb on - strand, within LU632_RS21395 at 4088.882 kb on + strand, within LU632_RS21395 at 4088.886 kb on + strand, within LU632_RS21395 at 4088.887 kb on - strand, within LU632_RS21395 at 4088.887 kb on - strand, within LU632_RS21395 at 4089.002 kb on + strand at 4089.002 kb on + strand at 4089.002 kb on + strand at 4089.002 kb on + strand at 4089.006 kb on + strand at 4089.006 kb on + strand at 4089.006 kb on + strand at 4089.006 kb on + strand at 4089.007 kb on - strand at 4089.007 kb on - strand at 4089.007 kb on - strand at 4089.007 kb on - strand at 4089.007 kb on - strand at 4089.008 kb on + strand at 4089.008 kb on + strand at 4089.008 kb on + strand at 4089.009 kb on - strand at 4089.009 kb on - strand at 4089.009 kb on - strand at 4089.094 kb on + strand at 4089.154 kb on + strand at 4089.154 kb on + strand at 4089.157 kb on + strand at 4089.158 kb on - strand at 4089.162 kb on + strand at 4089.162 kb on + strand at 4089.162 kb on + strand at 4089.163 kb on - strand at 4089.175 kb on + strand at 4089.175 kb on + strand at 4089.175 kb on + strand at 4089.176 kb on - strand at 4089.196 kb on - strand at 4089.221 kb on + strand at 4089.273 kb on - strand, within aaeB at 4089.314 kb on + strand, within aaeB at 4089.314 kb on + strand, within aaeB at 4089.315 kb on - strand, within aaeB at 4089.363 kb on - strand, within aaeB at 4089.383 kb on + strand, within aaeB at 4089.384 kb on - strand, within aaeB at 4089.409 kb on + strand, within aaeB at 4089.476 kb on - strand, within aaeB at 4089.479 kb on + strand, within aaeB at 4089.479 kb on + strand, within aaeB at 4089.480 kb on - strand, within aaeB at 4089.480 kb on - strand, within aaeB at 4089.516 kb on - strand, within aaeB at 4089.620 kb on + strand, within aaeB at 4089.639 kb on - strand, within aaeB at 4089.736 kb on - strand, within aaeB at 4089.740 kb on + strand, within aaeB at 4089.741 kb on - strand, within aaeB at 4089.772 kb on + strand, within aaeB at 4089.773 kb on - strand, within aaeB at 4089.773 kb on - strand, within aaeB at 4089.776 kb on - strand, within aaeB at 4090.026 kb on + strand, within aaeB at 4090.027 kb on - strand, within aaeB at 4090.075 kb on - strand, within aaeB at 4090.088 kb on - strand, within aaeB at 4090.088 kb on - strand, within aaeB at 4090.131 kb on - strand, within aaeB at 4090.181 kb on + strand, within aaeB at 4090.239 kb on + strand, within aaeB at 4090.240 kb on - strand, within aaeB at 4090.241 kb on + strand, within aaeB at 4090.241 kb on + strand, within aaeB at 4090.241 kb on + strand, within aaeB at 4090.241 kb on + strand, within aaeB at 4090.242 kb on - strand, within aaeB at 4090.242 kb on - strand, within aaeB at 4090.242 kb on - strand, within aaeB at 4090.243 kb on + strand, within aaeB at 4090.243 kb on + strand, within aaeB at 4090.244 kb on - strand, within aaeB at 4090.244 kb on - strand, within aaeB at 4090.270 kb on + strand, within aaeB at 4090.365 kb on + strand, within aaeB at 4090.366 kb on - strand, within aaeB at 4090.366 kb on - strand, within aaeB at 4090.366 kb on - strand, within aaeB at 4090.425 kb on - strand, within aaeB at 4090.474 kb on + strand, within aaeB at 4090.577 kb on + strand, within aaeB at 4090.652 kb on + strand, within aaeB at 4090.808 kb on + strand, within aaeB at 4090.808 kb on + strand, within aaeB at 4090.829 kb on + strand, within aaeB at 4090.832 kb on + strand at 4090.832 kb on + strand at 4090.910 kb on + strand at 4090.911 kb on - strand at 4091.018 kb on - strand at 4091.018 kb on - strand at 4091.065 kb on + strand at 4091.066 kb on - strand at 4091.173 kb on - strand, within aaeA at 4091.241 kb on + strand, within aaeA at 4091.292 kb on + strand, within aaeA at 4091.297 kb on + strand, within aaeA at 4091.298 kb on - strand, within aaeA at 4091.378 kb on + strand, within aaeA at 4091.378 kb on + strand, within aaeA at 4091.378 kb on + strand, within aaeA at 4091.379 kb on - strand, within aaeA at 4091.379 kb on - strand, within aaeA at 4091.391 kb on - strand, within aaeA at 4091.608 kb on + strand, within aaeA at 4091.610 kb on + strand, within aaeA at 4091.678 kb on + strand, within aaeA at 4091.678 kb on + strand, within aaeA at 4091.871 kb on - strand at 4091.950 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MelonXylem remove 4,088,582 - -0.4 4,088,833 + LU632_RS21395 0.71 +0.4 4,088,834 - LU632_RS21395 0.71 +2.0 4,088,879 - LU632_RS21395 0.84 +0.5 4,088,879 - LU632_RS21395 0.84 +0.2 4,088,882 + LU632_RS21395 0.85 -0.4 4,088,886 + LU632_RS21395 0.86 -0.0 4,088,887 - LU632_RS21395 0.86 +0.4 4,088,887 - LU632_RS21395 0.86 -0.3 4,089,002 + +0.9 4,089,002 + +0.4 4,089,002 + +0.7 4,089,002 + -1.3 4,089,006 + +0.1 4,089,006 + -0.5 4,089,006 + +0.3 4,089,006 + -0.3 4,089,007 - +0.5 4,089,007 - +0.5 4,089,007 - +0.0 4,089,007 - -0.2 4,089,007 - -0.8 4,089,008 + +0.1 4,089,008 + +0.3 4,089,008 + +0.9 4,089,009 - +1.2 4,089,009 - -0.3 4,089,009 - +1.0 4,089,094 + +0.0 4,089,154 + +0.2 4,089,154 + +0.5 4,089,157 + +0.0 4,089,158 - +1.5 4,089,162 + -0.3 4,089,162 + -0.5 4,089,162 + +0.4 4,089,163 - +0.3 4,089,175 + +0.2 4,089,175 + +0.0 4,089,175 + -0.3 4,089,176 - -0.1 4,089,196 - +3.0 4,089,221 + -0.3 4,089,273 - aaeB LU632_RS21400 0.10 +1.3 4,089,314 + aaeB LU632_RS21400 0.13 -1.1 4,089,314 + aaeB LU632_RS21400 0.13 -0.0 4,089,315 - aaeB LU632_RS21400 0.13 -1.5 4,089,363 - aaeB LU632_RS21400 0.15 -0.1 4,089,383 + aaeB LU632_RS21400 0.16 +0.7 4,089,384 - aaeB LU632_RS21400 0.16 +0.0 4,089,409 + aaeB LU632_RS21400 0.17 +0.0 4,089,476 - aaeB LU632_RS21400 0.21 -0.4 4,089,479 + aaeB LU632_RS21400 0.21 +1.0 4,089,479 + aaeB LU632_RS21400 0.21 +0.1 4,089,480 - aaeB LU632_RS21400 0.21 +0.0 4,089,480 - aaeB LU632_RS21400 0.21 -0.4 4,089,516 - aaeB LU632_RS21400 0.23 -0.5 4,089,620 + aaeB LU632_RS21400 0.28 +1.4 4,089,639 - aaeB LU632_RS21400 0.29 -0.6 4,089,736 - aaeB LU632_RS21400 0.34 +1.0 4,089,740 + aaeB LU632_RS21400 0.34 +1.0 4,089,741 - aaeB LU632_RS21400 0.34 -0.4 4,089,772 + aaeB LU632_RS21400 0.36 -1.4 4,089,773 - aaeB LU632_RS21400 0.36 +1.0 4,089,773 - aaeB LU632_RS21400 0.36 -0.2 4,089,776 - aaeB LU632_RS21400 0.36 +0.0 4,090,026 + aaeB LU632_RS21400 0.49 +0.1 4,090,027 - aaeB LU632_RS21400 0.49 -0.0 4,090,075 - aaeB LU632_RS21400 0.51 -0.7 4,090,088 - aaeB LU632_RS21400 0.52 -0.1 4,090,088 - aaeB LU632_RS21400 0.52 +0.5 4,090,131 - aaeB LU632_RS21400 0.54 -0.1 4,090,181 + aaeB LU632_RS21400 0.57 -0.0 4,090,239 + aaeB LU632_RS21400 0.60 +0.6 4,090,240 - aaeB LU632_RS21400 0.60 -1.8 4,090,241 + aaeB LU632_RS21400 0.60 -0.0 4,090,241 + aaeB LU632_RS21400 0.60 +1.0 4,090,241 + aaeB LU632_RS21400 0.60 +0.8 4,090,241 + aaeB LU632_RS21400 0.60 -0.2 4,090,242 - aaeB LU632_RS21400 0.60 +0.0 4,090,242 - aaeB LU632_RS21400 0.60 +0.1 4,090,242 - aaeB LU632_RS21400 0.60 +0.2 4,090,243 + aaeB LU632_RS21400 0.60 +1.5 4,090,243 + aaeB LU632_RS21400 0.60 +2.4 4,090,244 - aaeB LU632_RS21400 0.60 +0.8 4,090,244 - aaeB LU632_RS21400 0.60 -0.2 4,090,270 + aaeB LU632_RS21400 0.61 +0.6 4,090,365 + aaeB LU632_RS21400 0.66 +0.2 4,090,366 - aaeB LU632_RS21400 0.66 -0.4 4,090,366 - aaeB LU632_RS21400 0.66 +0.1 4,090,366 - aaeB LU632_RS21400 0.66 -1.0 4,090,425 - aaeB LU632_RS21400 0.69 +0.2 4,090,474 + aaeB LU632_RS21400 0.72 +0.6 4,090,577 + aaeB LU632_RS21400 0.77 -0.7 4,090,652 + aaeB LU632_RS21400 0.81 +0.4 4,090,808 + aaeB LU632_RS21400 0.89 +0.6 4,090,808 + aaeB LU632_RS21400 0.89 +0.4 4,090,829 + aaeB LU632_RS21400 0.90 +0.7 4,090,832 + -1.0 4,090,832 + +0.4 4,090,910 + -0.1 4,090,911 - +0.8 4,091,018 - +0.3 4,091,018 - +0.3 4,091,065 + -0.3 4,091,066 - +0.2 4,091,173 - aaeA LU632_RS21405 0.15 -0.1 4,091,241 + aaeA LU632_RS21405 0.22 -2.0 4,091,292 + aaeA LU632_RS21405 0.28 -0.0 4,091,297 + aaeA LU632_RS21405 0.28 -0.8 4,091,298 - aaeA LU632_RS21405 0.29 -0.4 4,091,378 + aaeA LU632_RS21405 0.37 +1.0 4,091,378 + aaeA LU632_RS21405 0.37 -0.3 4,091,378 + aaeA LU632_RS21405 0.37 -0.0 4,091,379 - aaeA LU632_RS21405 0.37 +0.0 4,091,379 - aaeA LU632_RS21405 0.37 +0.1 4,091,391 - aaeA LU632_RS21405 0.38 +1.0 4,091,608 + aaeA LU632_RS21405 0.62 -0.1 4,091,610 + aaeA LU632_RS21405 0.62 -0.4 4,091,678 + aaeA LU632_RS21405 0.69 +0.0 4,091,678 + aaeA LU632_RS21405 0.69 -0.1 4,091,871 - +0.3 4,091,950 - +0.0
Or see this region's nucleotide sequence